Detailed information    

insolico Bioinformatically predicted

Overview

Name   pilE   Type   Machinery gene
Locus tag   PIG43_RS01595 Genome accession   NZ_CP116387
Coordinates   343472..343897 (+) Length   141 a.a.
NCBI ID   WP_059212319.1    Uniprot ID   -
Organism   Acinetobacter baumannii strain WM98     
Function   assembly of type IV pilus (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 338472..348897
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  PIG43_RS01585 (PIG43_01585) pilY1 339128..342982 (+) 3855 WP_000768943.1 VWA domain-containing protein Machinery gene
  PIG43_RS01590 (PIG43_01590) pilY2 342993..343475 (+) 483 WP_001046489.1 prepilin-type N-terminal cleavage/methylation domain-containing protein Machinery gene
  PIG43_RS01595 (PIG43_01595) pilE 343472..343897 (+) 426 WP_059212319.1 type IV pilin protein Machinery gene
  PIG43_RS01600 (PIG43_01600) rpsP 344044..344295 (+) 252 WP_000260334.1 30S ribosomal protein S16 -
  PIG43_RS01605 (PIG43_01605) rimM 344315..344863 (+) 549 WP_000189236.1 ribosome maturation factor RimM -
  PIG43_RS01610 (PIG43_01610) trmD 344909..345649 (+) 741 WP_000464595.1 tRNA (guanosine(37)-N1)-methyltransferase TrmD -
  PIG43_RS01615 (PIG43_01615) rplS 345857..346225 (+) 369 WP_000014562.1 50S ribosomal protein L19 -
  PIG43_RS01620 (PIG43_01620) - 346277..347218 (-) 942 WP_085916958.1 triacylglycerol lipase -
  PIG43_RS01625 (PIG43_01625) - 347333..348364 (-) 1032 WP_001189459.1 lipase secretion chaperone -

Sequence

Protein


Download         Length: 141 a.a.        Molecular weight: 15191.41 Da        Isoelectric Point: 7.8106

>NTDB_id=776939 PIG43_RS01595 WP_059212319.1 343472..343897(+) (pilE) [Acinetobacter baumannii strain WM98]
MKNGFSLIEIMVVVAIVAILAAIATPSYLQYLRKGHRTAVQSEMMNIAQTLESQKIVNNRYPSDATIQSIYGSNVSPIQG
QALYKLAFATLNDSTWVLTAIPISTSSQAGDGIICLNDQGQKYWAKGATVCALSASSSWTE

Nucleotide


Download         Length: 426 bp        

>NTDB_id=776939 PIG43_RS01595 WP_059212319.1 343472..343897(+) (pilE) [Acinetobacter baumannii strain WM98]
GTGAAGAATGGTTTTTCTTTAATTGAAATTATGGTCGTGGTAGCAATAGTTGCAATTTTAGCGGCTATAGCCACCCCTTC
ATATTTACAATATTTGCGTAAAGGACATCGTACTGCTGTTCAATCCGAAATGATGAATATTGCGCAGACTTTAGAGTCTC
AAAAAATAGTAAATAACCGTTATCCTTCGGATGCAACTATACAATCAATTTATGGTTCTAATGTGAGTCCTATACAAGGT
CAGGCTCTATATAAGTTAGCTTTTGCAACTCTAAATGATTCAACTTGGGTACTTACTGCAATACCTATTTCTACTAGCTC
ACAAGCAGGTGATGGAATTATTTGTTTAAATGACCAAGGGCAAAAATATTGGGCAAAGGGTGCCACAGTTTGTGCACTAT
CTGCTTCATCGAGTTGGACCGAGTAA

Domains

Predicted by InterproScan.

Type IV minor pilin ComP, DNA uptake sequence receptor (ComP_DUS)

(26-115)

Prokaryotic N-terminal methylation motif (N_methyl)

(2-24)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  pilE Acinetobacter baumannii D1279779

89.362

100

0.894
  comF Acinetobacter baylyi ADP1

48.571

99.291

0.482