Detailed information    

insolico Bioinformatically predicted

Overview

Name   proC   Type   Machinery gene
Locus tag   QU610_RS00940 Genome accession   NZ_CP129105
Coordinates   191034..191807 (-) Length   257 a.a.
NCBI ID   WP_137296508.1    Uniprot ID   -
Organism   Helicobacter pylori strain HP45k     
Function   DNA uptake (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 186034..196807
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  QU610_RS00905 (QU610_00905) - 186259..187419 (+) 1161 WP_137296512.1 HP1165 family MFS efflux transporter -
  QU610_RS00910 (QU610_00910) - 187426..188400 (-) 975 WP_137296511.1 NAD(P)/FAD-dependent oxidoreductase -
  QU610_RS00915 (QU610_00915) ccoS 188426..188617 (-) 192 WP_001090958.1 cbb3-type cytochrome oxidase assembly protein CcoS -
  QU610_RS00920 (QU610_00920) - 188742..189323 (+) 582 WP_137296510.1 DedA family protein -
  QU610_RS00925 (QU610_00925) - 189415..189909 (+) 495 WP_127982937.1 flavodoxin -
  QU610_RS00930 (QU610_00930) ybeY 189963..190385 (+) 423 WP_137296509.1 rRNA maturation RNase YbeY -
  QU610_RS00935 (QU610_00935) fic 190474..191007 (-) 534 WP_000549887.1 protein adenylyltransferase Fic -
  QU610_RS00940 (QU610_00940) proC 191034..191807 (-) 774 WP_137296508.1 pyrroline-5-carboxylate reductase Machinery gene
  QU610_RS00945 (QU610_00945) hopL 191820..195497 (-) 3678 WP_137296507.1 Hop family outer membrane protein HopL -

Sequence

Protein


Download         Length: 257 a.a.        Molecular weight: 28192.85 Da        Isoelectric Point: 8.3297

>NTDB_id=776909 QU610_RS00940 WP_137296508.1 191034..191807(-) (proC) [Helicobacter pylori strain HP45k]
MEILQFIGYGNMAQAILEGAHEILSKRFILEVTGRNPEKIAPFLQEKNIQAQIVPYKDAIDIRQKFVFLLFKPYNLKDFN
YQGQAKSVLSALAGVSFEALSNAINSLHYLKCMPNIASKFALSSTAVCEKSVVPSISEKALSIIESFGNCVRVGNEEQVD
ASIATNGSALAFLSLVASSLKDAGIREGLNARDSLELVEMSFKGFAKLLEKERPEMIIEQICTPKGATIEGLSVLEKKGV
RGAFIKACHESVKKMRL

Nucleotide


Download         Length: 774 bp        

>NTDB_id=776909 QU610_RS00940 WP_137296508.1 191034..191807(-) (proC) [Helicobacter pylori strain HP45k]
ATGGAAATCTTACAATTCATCGGCTATGGGAACATGGCTCAAGCGATTTTAGAAGGCGCTCATGAAATTTTATCCAAGCG
TTTTATTTTAGAGGTTACCGGGCGAAACCCTGAAAAAATCGCCCCCTTTTTACAAGAAAAAAACATCCAAGCTCAAATCG
TGCCTTACAAAGACGCTATTGATATACGCCAAAAATTCGTGTTTTTACTTTTTAAACCTTATAACCTTAAGGATTTTAAT
TATCAAGGGCAAGCTAAAAGCGTTTTGAGCGCTTTAGCTGGCGTGAGTTTTGAAGCTTTAAGCAATGCGATTAATTCTTT
ACATTACTTAAAATGCATGCCCAATATTGCGAGCAAGTTCGCCCTTTCTTCTACAGCGGTGTGTGAAAAATCGGTTGTGC
CTTCAATAAGCGAGAAAGCTTTGAGTATTATTGAGAGTTTTGGGAATTGCGTGCGAGTGGGTAATGAAGAGCAGGTGGAT
GCCAGTATAGCGACCAATGGGAGCGCGCTCGCTTTTTTAAGCTTGGTAGCGAGCAGTTTGAAAGATGCCGGCATTAGAGA
GGGCTTGAACGCTAGAGATTCTTTAGAATTGGTGGAAATGAGTTTTAAAGGCTTTGCCAAGCTTTTAGAAAAAGAACGCC
CCGAGATGATTATAGAGCAAATTTGCACCCCTAAAGGCGCAACGATTGAAGGCTTGAGCGTTTTAGAAAAAAAGGGGGTT
AGGGGAGCGTTCATCAAAGCATGCCATGAAAGCGTGAAAAAAATGCGCCTCTAA

Domains

Predicted by InterProScan.

Pyrroline-5-carboxylate reductase dimerisation (P5CR_dimer)

(156-255)

NADP oxidoreductase coenzyme F420-dependent (F420_oxidored)

(4-94)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  proC Campylobacter jejuni subsp. jejuni 81-176

37.008

98.833

0.366