Detailed information    

insolico Bioinformatically predicted

Overview

Name   recD/recD2/recDB   Type   Machinery gene
Locus tag   QWH96_RS09560 Genome accession   NZ_CP128987
Coordinates   1897082..1899535 (+) Length   817 a.a.
NCBI ID   WP_138128163.1    Uniprot ID   -
Organism   Streptococcus dysgalactiae subsp. equisimilis strain NS3396     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 1892082..1904535
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  QWH96_RS09540 (QWH96_09535) - 1894495..1895040 (-) 546 WP_003061010.1 CvpA family protein -
  QWH96_RS09545 (QWH96_09540) - 1895043..1895351 (-) 309 WP_003052702.1 hypothetical protein -
  QWH96_RS09550 (QWH96_09545) rnhC 1895508..1896407 (+) 900 WP_003061515.1 ribonuclease HIII -
  QWH96_RS09555 (QWH96_09550) lepB 1896429..1897022 (+) 594 WP_012767541.1 signal peptidase I -
  QWH96_RS09560 (QWH96_09555) recD/recD2/recDB 1897082..1899535 (+) 2454 WP_138128163.1 ATP-dependent RecD-like DNA helicase Machinery gene
  QWH96_RS09565 (QWH96_09560) - 1899626..1900114 (+) 489 WP_003056836.1 hypothetical protein -
  QWH96_RS09570 (QWH96_09565) dinB 1900203..1901300 (-) 1098 WP_003052709.1 DNA polymerase IV -
  QWH96_RS09575 (QWH96_09570) pflB 1901509..1903836 (+) 2328 WP_003056840.1 formate C-acetyltransferase -
  QWH96_RS09580 (QWH96_09575) - 1903941..1904393 (+) 453 WP_003056842.1 GNAT family N-acetyltransferase -

Sequence

Protein


Download         Length: 817 a.a.        Molecular weight: 91253.06 Da        Isoelectric Point: 4.5799

>NTDB_id=776881 QWH96_RS09560 WP_138128163.1 1897082..1899535(+) (recD/recD2/recDB) [Streptococcus dysgalactiae subsp. equisimilis strain NS3396]
MEHFFTGTVDRIIFENAANFFKILLLAIEDTDSDIDDFEIIITGTMADIIEGDDYTFWGELTQHPKYGQQLKLSRYQKVK
PSSSGLVNYFSSDHFKGIGKKTAEKIIALYGNNTIDHILEDPSKLETISGLSKANRQAFVAKLKLNYGTEQLIAGLVELG
LSNRFAFQAFEKYKEEALDLVKENPYQLVEDLQGFGFKMADALAENLGIESDSPKRFRAALLHCLLEESVSRGDTYVQAR
QLLDFAITLLEDARQVECDPAAVAEQLSELIIEGKIKNSDTKLFDASLYFAEEGIAKNISRLLDTPLSQSFSHDTIQTTI
QAVQEDFAITYDQVQQEAIAKALTSKVFLLTGGPGTGKTTVIRGILQAYANLHQIDLDKKDLPILLAAPTGRAARRMNEL
TGLPSATIHRHLGLNGDNDYQAMEDYLDCDLLIVDEFSMVDTWLANQLLAAISSTTQVIIVGDSDQLPSVGPGQVLSDLL
KVNSLPQIALQKIFRQSQESTIVDLADQMRRGILAADFRDKKADRSYFEAQASFIPDMIQKIVLSAIKSGIPAEEIQILA
PMYKGQAGINHLNQLMQNLLNPLEGQTEFLFNDTHFRKGDKVLHLVNDAQLNVFNGDIGYITDLIPAKYTESKQDELILD
FDGSEVTYPRNEWLKLTLAYAMSIHKSQGSEFQVVILPITRQSGRLLQRNLIYTAITRSKSKLIMLGEFAAFDYAIKNEG
DKRQTYLVERFQEQSDLASSQPNHELRSKEQTSLFSNTAALEDDSQKSSSQSTNSNPTENSQSDNDDFRLTPENYSTIDS
MIGLTESDVALFFQKKS

Nucleotide


Download         Length: 2454 bp        

>NTDB_id=776881 QWH96_RS09560 WP_138128163.1 1897082..1899535(+) (recD/recD2/recDB) [Streptococcus dysgalactiae subsp. equisimilis strain NS3396]
ATGGAACACTTTTTTACTGGTACTGTTGACCGCATTATCTTTGAAAATGCAGCTAATTTTTTTAAAATTCTCCTCCTTGC
CATCGAAGACACAGATAGTGATATTGACGACTTTGAAATCATTATCACAGGGACGATGGCTGACATTATTGAAGGAGATG
ACTACACCTTTTGGGGGGAATTGACCCAGCACCCTAAATATGGACAGCAACTCAAACTAAGCCGTTACCAAAAAGTCAAA
CCTAGTTCATCTGGTTTGGTTAATTATTTCTCCAGCGACCATTTTAAGGGGATTGGAAAGAAAACAGCGGAGAAAATCAT
TGCCCTCTATGGCAATAATACTATTGACCATATTTTAGAAGACCCAAGTAAATTAGAAACTATTTCTGGTCTGTCCAAGG
CTAATCGTCAAGCCTTTGTCGCTAAACTGAAATTGAATTATGGCACAGAGCAACTGATTGCTGGTCTCGTCGAACTTGGC
CTTAGCAACCGTTTTGCCTTTCAAGCGTTTGAGAAGTACAAAGAAGAGGCTCTTGACCTTGTTAAAGAAAATCCCTATCA
ATTAGTCGAAGATCTACAAGGTTTTGGGTTTAAGATGGCAGATGCTCTCGCTGAAAACTTAGGGATTGAGAGCGACTCTC
CAAAACGTTTTCGTGCTGCCCTCCTGCACTGCCTCTTGGAAGAATCCGTCAGTCGAGGAGACACTTATGTCCAAGCACGA
CAATTATTAGACTTTGCCATCACACTCCTTGAAGATGCACGTCAAGTAGAATGTGACCCTGCTGCTGTGGCTGAACAACT
AAGCGAGTTAATCATAGAGGGCAAAATCAAAAACAGTGACACCAAATTGTTTGATGCTAGCCTTTATTTTGCTGAAGAGG
GGATTGCTAAGAATATCTCTCGTCTCTTAGATACCCCTTTAAGTCAGTCATTTAGTCATGATACCATCCAAACAACCATC
CAAGCCGTTCAAGAAGACTTTGCTATCACTTATGACCAGGTGCAGCAAGAAGCCATTGCTAAAGCCTTAACCAGCAAGGT
ATTTCTCCTAACAGGTGGTCCCGGAACAGGGAAAACAACTGTTATTCGAGGCATTTTACAGGCTTACGCTAACCTGCATC
AGATTGATTTGGATAAAAAAGACCTTCCTATCTTGTTAGCAGCTCCAACAGGTCGGGCTGCACGTCGTATGAATGAGTTG
ACTGGACTTCCTAGCGCAACCATCCACAGGCACTTAGGCCTCAACGGCGACAACGATTACCAAGCCATGGAAGATTATCT
AGACTGCGACTTGCTGATTGTCGATGAATTTTCAATGGTGGATACCTGGCTTGCCAACCAATTGTTAGCAGCGATTAGTT
CAACAACTCAAGTAATTATTGTCGGAGATAGTGACCAGCTTCCTTCGGTTGGACCCGGTCAAGTCCTGTCAGATCTTTTA
AAAGTCAATAGCCTGCCCCAAATCGCCTTGCAAAAGATATTTCGTCAATCCCAAGAATCTACTATTGTAGATTTGGCAGA
CCAGATGCGTCGAGGAATCTTAGCTGCTGACTTTCGTGACAAAAAAGCTGACCGTTCTTATTTTGAAGCCCAAGCCTCTT
TCATCCCGGACATGATTCAAAAAATTGTTCTATCTGCTATTAAAAGTGGCATCCCTGCTGAGGAAATTCAAATTTTAGCG
CCTATGTACAAAGGACAGGCTGGCATCAATCATCTTAACCAATTGATGCAAAACCTCCTCAACCCTTTGGAAGGGCAAAC
GGAATTTCTGTTCAATGATACGCATTTTCGTAAAGGTGATAAAGTCCTGCACTTAGTCAACGATGCTCAGTTGAATGTCT
TTAACGGAGATATTGGTTATATTACAGATTTGATTCCTGCTAAATATACCGAATCTAAGCAAGACGAATTAATCTTAGAT
TTTGACGGTAGCGAAGTCACGTACCCTAGAAATGAATGGCTAAAATTAACCTTAGCCTATGCCATGAGCATTCATAAGTC
ACAAGGGAGCGAGTTTCAAGTGGTGATTTTACCCATCACACGCCAAAGCGGCCGACTTTTGCAACGAAATTTAATTTATA
CTGCTATCACCCGTTCTAAAAGTAAGTTGATTATGCTAGGTGAATTTGCAGCCTTTGACTATGCTATTAAAAATGAAGGG
GATAAACGGCAAACTTATTTGGTGGAACGCTTCCAAGAACAATCCGACTTAGCCTCCTCTCAACCTAACCACGAGCTAAG
ATCAAAAGAGCAGACCTCCCTTTTTTCTAATACGGCAGCCCTTGAGGACGACTCTCAAAAATCTTCCTCTCAATCAACAA
ACTCTAACCCCACTGAGAACTCTCAGTCAGATAATGATGATTTTAGGTTAACACCTGAGAATTATTCGACTATCGATTCG
ATGATAGGGCTTACAGAATCAGATGTTGCCCTCTTTTTCCAGAAAAAATCCTAG

Domains

Predicted by InterProScan.

UvrD-like helicase C-terminal domain (UvrD_C_2)

(659-705)

AAA domain (AAA_30)

(331-522)

Helix-hairpin-helix containing domain (HHH_RecD2)

(147-236)

ATP-dependent RecD-like DNA helicase SH3 domain (SH3_13)

(572-641)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  recD/recD2/recDB Bacillus subtilis subsp. subtilis str. 168

42.44

92.289

0.392