Detailed information    

insolico Bioinformatically predicted

Overview

Name   amiE   Type   Regulator
Locus tag   QWH96_RS05355 Genome accession   NZ_CP128987
Coordinates   1033398..1034072 (+) Length   224 a.a.
NCBI ID   WP_002982458.1    Uniprot ID   A0ABU0A9I5
Organism   Streptococcus dysgalactiae subsp. equisimilis strain NS3396     
Function   internalize XIP (predicted from homology)   
Competence regulation

Genomic Context

Location: 1028398..1039072
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  QWH96_RS05330 (QWH96_05335) - 1028648..1029607 (+) 960 WP_037588398.1 DUF1002 domain-containing protein -
  QWH96_RS05335 - 1029747..1029872 (+) 126 Protein_1013 adhesion protein -
  QWH96_RS05345 (QWH96_05345) - 1031450..1031734 (+) 285 WP_015016971.1 hypothetical protein -
  QWH96_RS05350 (QWH96_05350) - 1032149..1033411 (+) 1263 WP_015016972.1 efflux RND transporter periplasmic adaptor subunit -
  QWH96_RS05355 (QWH96_05355) amiE 1033398..1034072 (+) 675 WP_002982458.1 ABC transporter ATP-binding protein Regulator
  QWH96_RS05360 (QWH96_05360) - 1034085..1035302 (+) 1218 WP_015016973.1 ABC transporter permease -
  QWH96_RS05365 (QWH96_05365) - 1035396..1036049 (+) 654 WP_002991237.1 response regulator transcription factor -
  QWH96_RS05370 (QWH96_05370) - 1036046..1037434 (+) 1389 WP_012766899.1 HAMP domain-containing sensor histidine kinase -

Sequence

Protein


Download         Length: 224 a.a.        Molecular weight: 24826.67 Da        Isoelectric Point: 5.7977

>NTDB_id=776842 QWH96_RS05355 WP_002982458.1 1033398..1034072(+) (amiE) [Streptococcus dysgalactiae subsp. equisimilis strain NS3396]
MLNLKDIRKSYHLGTEEFAILKGIDLEVNEGDFLAIMGPSGSGKSTLMNIIGCLDKPGSGSYAIEGRDVSSLSDNELADL
RNQKIGFVFQNFNLMPKLTACQNVELPLTYMNVPKKERRKRALEMLKLVGLEERSEFKPMELSGGQKQRVAIARALVTNP
SFILGDEPTGALDTKTSVQIMDLFKQFNDNGKTIIIITHEPEVAALCKKTVILRDGNIEHSDIE

Nucleotide


Download         Length: 675 bp        

>NTDB_id=776842 QWH96_RS05355 WP_002982458.1 1033398..1034072(+) (amiE) [Streptococcus dysgalactiae subsp. equisimilis strain NS3396]
TTGTTAAACCTTAAAGATATTCGAAAAAGCTATCATCTTGGGACTGAAGAATTTGCGATTTTAAAAGGAATCGATTTAGA
AGTTAACGAGGGTGACTTTTTAGCCATCATGGGACCATCAGGTTCAGGAAAGTCAACATTGATGAATATCATTGGGTGCT
TAGATAAGCCTGGCTCTGGCTCATATGCCATTGAAGGCAGAGACGTGTCGTCCTTATCTGATAATGAACTTGCTGATTTG
CGCAATCAAAAAATCGGCTTTGTTTTTCAAAACTTTAACCTGATGCCCAAGCTAACAGCTTGTCAAAACGTCGAATTGCC
CTTGACCTACATGAATGTTCCTAAAAAAGAGCGTCGCAAACGAGCCCTAGAGATGTTAAAGCTAGTAGGACTAGAAGAAC
GTAGTGAATTTAAACCGATGGAGCTATCTGGTGGGCAAAAACAGCGTGTAGCGATTGCAAGAGCTTTAGTCACTAACCCA
AGCTTTATCCTTGGCGATGAGCCAACGGGTGCACTAGATACAAAAACCAGCGTCCAAATCATGGACCTATTTAAACAATT
CAATGATAACGGTAAAACGATTATTATCATCACACACGAGCCTGAAGTAGCTGCCCTATGCAAAAAGACGGTGATCCTAA
GAGATGGTAATATAGAACATTCCGATATAGAGTAA

Domains

Predicted by InterProScan.

ABC transporter (ABC_tran)

(21-169)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  amiE Streptococcus salivarius strain HSISS4

34.454

100

0.366