Detailed information    

insolico Bioinformatically predicted

Overview

Name   rcrP   Type   Regulator
Locus tag   QWH96_RS04540 Genome accession   NZ_CP128987
Coordinates   868788..870533 (+) Length   581 a.a.
NCBI ID   WP_003056245.1    Uniprot ID   A0ABU0A705
Organism   Streptococcus dysgalactiae subsp. equisimilis strain NS3396     
Function   regulate competence (predicted from homology)   
Competence regulation

Genomic Context

Location: 863788..875533
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  QWH96_RS04520 (QWH96_04525) - 864250..864630 (+) 381 WP_003056276.1 DUF1149 family protein -
  QWH96_RS04525 (QWH96_04530) - 864630..865478 (+) 849 WP_150336151.1 DegV family protein -
  QWH96_RS04530 (QWH96_04535) - 865598..866806 (+) 1209 WP_012766833.1 CCA tRNA nucleotidyltransferase -
  QWH96_RS04535 (QWH96_04540) - 866803..868680 (+) 1878 WP_003056264.1 ABC-F family ATP-binding cassette domain-containing protein -
  QWH96_RS04540 (QWH96_04545) rcrP 868788..870533 (+) 1746 WP_003056245.1 ABC transporter ATP-binding protein Regulator
  QWH96_RS04545 (QWH96_04550) rcrQ 870533..872305 (+) 1773 WP_015016916.1 ABC transporter ATP-binding protein Regulator
  QWH96_RS04550 (QWH96_04555) gdhA 872495..873844 (+) 1350 WP_046177118.1 NADP-specific glutamate dehydrogenase -
  QWH96_RS04555 (QWH96_04560) - 873969..874379 (+) 411 WP_012766836.1 peptide deformylase -

Sequence

Protein


Download         Length: 581 a.a.        Molecular weight: 65196.82 Da        Isoelectric Point: 5.6010

>NTDB_id=776838 QWH96_RS04540 WP_003056245.1 868788..870533(+) (rcrP) [Streptococcus dysgalactiae subsp. equisimilis strain NS3396]
MGLIWSYLSSKPKWLALDILGGLLFVLVNLGLPTILARMIDQGILQQDTKALYGWTLVMFVIIVLGVLGRIILSYASGKL
TTTMIKELRNDMYRQLQDYSHTEYEKIGVASLVTRMTSDAFVLMQFAEMSLRLGVVTPLMMIFSVLMIFLTSPSLAWIVA
VSMPFLVLVVVYVAVKTRPLSEKQQESLDHINQLVRENLTGLRVIRAFSREAFQQERFDERNQEYAGISKRLFTLTGLTE
PLFVQIIIAMIVAIVWFALDPLAKGQIQIGDLVAFIEYSFHALFSFLMFANLFTMYPKMAVSSKRIKEVMDMPISISKNE
DGVTETLTRGYLEFDNVTFAYPGETESPVLHNISFKTKPGETIAFIGSTGSGKSSLVNLIPRFYDVTFGRILVDGVDVRD
YQLKSLRAKIGFIPQKALLFTGTIEDNLKYGKADASYWELDEATDVSQARAFIASREKGYQTHLAEAGSNLSGGQKQRLS
IARAVVKKPDIYIFDDSFSALDYQTDAALRKRLKEVTEEATVLIVAQRVGTIMDADQIIVLDQGEIVGRGKHEELMATNA
IYREIADSQLNKGNLMEEEVD

Nucleotide


Download         Length: 1746 bp        

>NTDB_id=776838 QWH96_RS04540 WP_003056245.1 868788..870533(+) (rcrP) [Streptococcus dysgalactiae subsp. equisimilis strain NS3396]
ATGGGGCTGATTTGGTCGTATTTATCATCAAAGCCTAAGTGGTTGGCTTTGGACATATTAGGTGGTCTATTATTTGTTCT
GGTTAATTTAGGATTGCCCACTATTTTAGCTCGGATGATAGACCAAGGAATCTTGCAGCAGGATACCAAAGCCTTATATG
GCTGGACATTGGTCATGTTTGTCATTATTGTGTTAGGTGTTCTTGGTCGAATTATCTTATCCTATGCATCTGGTAAGTTA
ACGACAACCATGATCAAGGAGCTGCGCAATGACATGTATCGTCAGTTGCAGGATTACTCTCATACAGAATATGAAAAAAT
TGGGGTTGCTTCTTTGGTTACCCGAATGACAAGTGATGCCTTTGTGCTCATGCAGTTTGCTGAAATGTCTTTACGTTTAG
GAGTAGTGACGCCCTTAATGATGATTTTTTCAGTGCTGATGATTTTCTTGACAAGTCCATCGTTAGCATGGATTGTGGCG
GTATCCATGCCTTTTTTGGTGCTGGTTGTTGTTTATGTCGCCGTCAAAACAAGGCCTCTCTCTGAAAAACAACAAGAAAG
TCTAGACCACATTAATCAGTTAGTCAGAGAAAATTTGACTGGTTTGCGCGTGATTAGAGCCTTTTCGAGAGAAGCATTTC
AACAGGAACGTTTTGATGAGCGTAATCAAGAATACGCCGGCATTTCTAAACGTCTCTTCACCTTAACAGGATTGACAGAA
CCACTATTTGTGCAAATCATTATTGCCATGATTGTAGCCATTGTTTGGTTTGCCTTAGACCCTTTGGCTAAGGGACAAAT
TCAAATTGGGGATTTGGTAGCCTTTATCGAGTATAGTTTTCATGCCCTTTTTTCGTTTTTGATGTTTGCTAATCTCTTTA
CCATGTATCCTAAAATGGCAGTTTCCAGCAAACGGATCAAAGAAGTCATGGACATGCCAATCTCTATTTCTAAAAATGAA
GATGGGGTAACAGAGACCTTGACAAGAGGTTACCTCGAATTTGACAATGTCACCTTTGCCTATCCTGGAGAAACAGAAAG
TCCTGTTCTACATAACATTTCTTTTAAAACCAAGCCTGGGGAAACCATCGCTTTTATTGGCTCAACAGGGTCAGGAAAAT
CATCCTTGGTGAATTTAATTCCTCGATTTTACGACGTGACGTTTGGGAGAATCTTGGTCGATGGGGTAGATGTCAGAGAT
TATCAGTTAAAATCTCTTCGTGCTAAAATTGGTTTCATCCCACAAAAAGCTCTGCTATTTACAGGAACTATCGAAGACAA
TTTAAAATATGGTAAGGCAGATGCTAGCTATTGGGAATTAGATGAAGCTACGGATGTGTCTCAAGCTAGAGCATTTATTG
CTAGCCGCGAAAAAGGCTATCAGACCCATCTAGCAGAAGCAGGAAGCAATTTATCAGGTGGTCAGAAACAACGGCTATCG
ATTGCCCGTGCGGTTGTTAAAAAACCCGATATTTATATCTTTGATGATTCTTTTTCGGCACTGGATTACCAAACCGATGC
TGCTTTAAGGAAGCGTCTGAAAGAAGTAACAGAGGAAGCGACTGTTTTGATTGTAGCTCAACGGGTTGGGACTATCATGG
ATGCCGATCAAATCATCGTTCTAGATCAAGGTGAAATTGTCGGTCGAGGCAAGCATGAGGAATTGATGGCAACCAATGCT
ATTTACCGTGAAATTGCTGATTCGCAATTAAACAAAGGAAATCTCATGGAAGAGGAGGTGGACTAA

Domains

Predicted by InterProScan.

ABC transporter (ABC_tran)

(350-497)

ABC transporter transmembrane region (ABC_membrane)

(26-280)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  rcrP Streptococcus mutans UA159

39.962

91.738

0.367