Detailed information NTG0077678

Bioinformatically predicted

Overview

• Name: pilD
• Type: Machinery gene
• Locus tag: MWM13_RS00555
• Genome accession: NZ_AP025609
• Coordinates: 100474..101544 (+)
• Length: 356 a.a.
• NCBI ID: WP_244347721.1
• Uniprot ID: -
• Organism: Thermus thermophilus strain SNM3-3
• Function: assembly of type IV pilus (predicted from homology) DNA binding and uptake

Genomic Context

Location: 95474..106544

Locus tag	Gene name	Coordinates (strand)	Size (bp)	Protein ID	Product	Description
MWM13_RS00535 (TthSNM33_01010)	-	95989..96771 (+)	783	WP_244347720.1	RNA methyltransferase	-
MWM13_RS00540 (TthSNM33_01020)	groES	96869..97174 (+)	306	WP_011174076.1	co-chaperone GroES	-
MWM13_RS00545 (TthSNM33_01030)	groL	97187..98818 (+)	1632	WP_011174077.1	chaperonin GroEL	-
MWM13_RS00550 (TthSNM33_01040)	-	98882..100414 (-)	1533	WP_244341079.1	carboxypeptidase M32	-
MWM13_RS00555 (TthSNM33_01050)	pilD	100474..101544 (+)	1071	WP_244347721.1	A24 family peptidase	Machinery gene
MWM13_RS00560 (TthSNM33_01060)	-	101581..102084 (+)	504	WP_223965844.1	DUF2939 domain-containing protein	-
MWM13_RS00565 (TthSNM33_01070)	-	102098..103018 (+)	921	WP_011227819.1	nitroreductase family protein	-
MWM13_RS00570 (TthSNM33_01080)	-	102972..103748 (-)	777	WP_244347722.1	C40 family peptidase	-
MWM13_RS00575 (TthSNM33_01090)	-	103749..104507 (-)	759	WP_041443621.1	DUF721 domain-containing protein	-
MWM13_RS00580 (TthSNM33_01100)	recF	104492..105523 (-)	1032	WP_244341083.1	DNA replication and repair protein RecF	Machinery gene

Sequence

Protein

• Length: 356 a.a.
• Molecular weight: 38113.38 Da
• Isoelectric Point: 7.7135

>NTDB_id=77678 MWM13_RS00555 WP_244347721.1 100474..101544(+) (pilD) [Thermus thermophilus strain SNM3-3]
MWPLFALFLGLAVGSFLNVVIHRLPRGESVVYPPSRCPQCGHRLGPWDLVPVLSYLALKGRCRYCARPISPRYPLVEALT
GGLFLLASLFYPPGVEALLVFLFLAFLVALAFIDVDTFELPDPLTYGLLFLGLLASWALAFPLPFRESLDGSLMAAGGLA
LVAGYGNFFLRRFREGRAEVPVGPHQVHMAALFGALLGPGVGMALAFLAWALSARTGRAVALPDRLTLPLLPLAFLLAPA
LGLDFLESLKGSLLAAGGLALAGGLYWAFRPLPEEGEEEEPVAMGYGDVKLLGALGAWLGPYAFLALFLGVFAGALLGLL
LRQRKLPFGPYLALGGVVAFFFGEALWGAYLRLLGV

Nucleotide

• Length: 1071 bp

>NTDB_id=77678 MWM13_RS00555 WP_244347721.1 100474..101544(+) (pilD) [Thermus thermophilus strain SNM3-3]
ATGTGGCCCCTTTTTGCCCTGTTCCTCGGCCTCGCGGTGGGTTCGTTTCTCAACGTGGTCATCCACCGCCTGCCCCGGGG
GGAGTCCGTCGTCTACCCCCCGTCCCGCTGCCCCCAGTGCGGCCACCGCCTGGGGCCTTGGGACCTGGTCCCCGTCCTCT
CCTACCTCGCCCTAAAGGGGCGGTGCCGCTACTGCGCCCGTCCCATCTCCCCCCGCTACCCCCTGGTGGAGGCCCTCACG
GGGGGGCTTTTTCTCCTCGCAAGCCTCTTCTACCCCCCTGGGGTGGAGGCCCTCTTGGTCTTCCTCTTCCTCGCCTTTCT
CGTGGCCCTCGCCTTCATTGACGTGGACACCTTTGAGCTTCCCGATCCCCTCACCTACGGCCTCCTCTTCCTTGGGCTTT
TGGCCTCCTGGGCGCTGGCCTTCCCCCTCCCCTTTAGGGAGAGCCTGGACGGAAGCCTCATGGCCGCCGGGGGGCTCGCC
CTGGTGGCGGGGTACGGGAACTTTTTCCTGAGGCGCTTTAGGGAGGGCAGGGCCGAGGTTCCCGTGGGGCCCCACCAGGT
CCACATGGCGGCCCTCTTTGGGGCGCTCTTGGGCCCAGGGGTGGGGATGGCCCTCGCCTTCCTCGCCTGGGCCCTCTCCG
CCCGCACGGGGCGGGCGGTGGCCCTCCCCGACCGGCTCACCCTGCCCCTTCTGCCCCTCGCCTTCCTCCTTGCCCCCGCC
CTAGGCCTGGACTTCCTGGAAAGCCTGAAGGGAAGCCTCCTCGCCGCCGGGGGGCTCGCCCTCGCCGGCGGGCTTTACTG
GGCCTTCCGGCCCCTTCCCGAGGAGGGCGAGGAGGAGGAGCCCGTGGCCATGGGCTACGGGGACGTGAAGCTTCTGGGGG
CCCTCGGGGCCTGGCTTGGCCCTTACGCCTTCCTCGCCCTCTTCCTCGGGGTCTTTGCCGGGGCCCTTCTGGGCCTTCTC
CTTAGGCAAAGGAAGCTCCCCTTCGGCCCCTACCTCGCCCTCGGGGGGGTGGTGGCCTTCTTCTTCGGCGAGGCCCTCTG
GGGGGCGTACCTGCGCCTTCTGGGCGTTTGA

Domains

Predicted by InterProScan.

• Type IV leader peptidase family (Peptidase_A24) (207-319)

• Bacterial Peptidase A24 N-terminal domain (A24_N_bact) (9-88)

Similar proteins

Only experimentally validated proteins are listed.

Protein	Organism	Identities (%)	Coverage (%)	Ha-value
pilD	Deinococcus radiodurans R1 = ATCC 13939 = DSM 20539	44.909	100	0.483