Detailed information NTG0776714

Bioinformatically predicted

Overview

• Name: recD2
• Type: Machinery gene
• Locus tag: PGH26_RS05940
• Genome accession: NZ_CP116341
• Coordinates: 1252293..1254803 (+)
• Length: 836 a.a.
• NCBI ID: WP_323693080.1
• Uniprot ID: -
• Organism: Sporosarcina jeotgali strain B2O-1
• Function: homologous recombination (predicted from homology) Homologous recombination

Genomic Context

Location: 1247293..1259803

Locus tag	Gene name	Coordinates (strand)	Size (bp)	Protein ID	Product	Description
PGH26_RS05915 (PGH26_05915)	-	1247435..1248721 (-)	1287	WP_323693075.1	replication-associated recombination protein A	-
PGH26_RS05920 (PGH26_05920)	-	1248858..1249280 (+)	423	WP_323693076.1	Rrf2 family transcriptional regulator	-
PGH26_RS05925 (PGH26_05925)	-	1249294..1250442 (+)	1149	WP_323693077.1	cysteine desulfurase family protein	-
PGH26_RS05930 (PGH26_05930)	mnmA	1250466..1251587 (+)	1122	WP_323693078.1	tRNA 2-thiouridine(34) synthase MnmA	-
PGH26_RS05935 (PGH26_05935)	-	1251601..1252278 (+)	678	WP_323693079.1	tetratricopeptide repeat protein	-
PGH26_RS05940 (PGH26_05940)	recD2	1252293..1254803 (+)	2511	WP_323693080.1	ATP-dependent RecD-like DNA helicase	Machinery gene
PGH26_RS05945 (PGH26_05945)	alaS	1255197..1257827 (+)	2631	WP_323693081.1	alanine--tRNA ligase	-
PGH26_RS05950 (PGH26_05950)	-	1257912..1258184 (+)	273	WP_025784830.1	IreB family regulatory phosphoprotein	-
PGH26_RS05955 (PGH26_05955)	ruvX	1258181..1258600 (+)	420	WP_025784829.1	Holliday junction resolvase RuvX	-
PGH26_RS05960 (PGH26_05960)	-	1258610..1258906 (+)	297	WP_323693082.1	DUF1292 domain-containing protein	-

Sequence

Protein

• Length: 836 a.a.
• Molecular weight: 92803.79 Da
• Isoelectric Point: 4.7393

>NTDB_id=776714 PGH26_RS05940 WP_323693080.1 1252293..1254803(+) (recD2) [Sporosarcina jeotgali strain B2O-1]
MEKTDSAVQEEPFLIGRAVVTIFHNPDSLFTIAKLKVRKTNCSFEGKEIVVKGNFPKLSEEEEYRFTGRLINHATYGQQF
DVKTFQKELPATETGLIHYLSGDMFPGIGRKTAETIINHLGPEAIRKIMENEDVLDEVPRLNAEKKETLVSVLRDNLGLE
RTIVKLNEWGFGPQVAMRIYQTYREVTIEKLTENPYRLIEDVEGVGFQRADELGRQLGITGTHTSRIQAAILHTINTGIL
SSGHVYLEAVQVLPEVKRLLESSQPEEIPFKLISTAIIELVEESRLSAEQRKLYLPSLYFSELGIASKMERILDQDRENT
FPSSEMRKAIGETEERLDVNYAETQIAAIEQALNSPAMILTGGPGTGKTTVVRGLVEVYAELHGLTLDPKEYAKKEEPFP
IILAAPTGRAAKRLSESTGLPAMTIHRLLGFTGQEKEEETEREIKARLVIIDEASMLDTWLAHQLLKAIDDDAQILFVGD
QDQLPSVGPGQVLRDFLESGTIPVVELTEIYRQSAGSTIIELAHAIKKSEPLGDLAMKTSDRSFIRTDADQVTTAVSQIV
KNALAKGQAIKDIQVLAPMYKGPAGIDALNSMIQEMVNPASSGRKEVTFGDVVYRIGDRVLQLVNQPESNVFNGDMGEVI
SILKAKETIEKKDLMIVSFDGIEVTYERSDLNQLTLAYCCSIHKSQGSEFPTVIMPVVRSHRKMLRRNLLYTGITRAKNF
LILCGSPNEFAEGIARMDERERQTTLKERLRGESLEPVASDTPNAETTISDREVSANTADALTDASVQTGPAGETVEVVQ
SQKELPHVLSIETILDVDPMVGMNGESPYDFMVSVD

Nucleotide

• Length: 2511 bp

>NTDB_id=776714 PGH26_RS05940 WP_323693080.1 1252293..1254803(+) (recD2) [Sporosarcina jeotgali strain B2O-1]
ATGGAAAAAACCGATTCAGCAGTTCAAGAAGAACCTTTTTTAATTGGCAGAGCGGTCGTAACGATTTTCCATAACCCTGA
TAGTTTGTTTACAATTGCCAAACTGAAAGTGCGAAAAACAAATTGTTCGTTTGAAGGGAAAGAAATTGTCGTCAAAGGGA
ACTTTCCGAAACTATCTGAAGAGGAAGAGTACCGGTTTACCGGAAGACTTATCAATCACGCAACGTATGGTCAGCAATTT
GATGTAAAGACGTTTCAAAAAGAATTACCGGCAACTGAAACAGGGTTAATTCACTACTTGTCAGGAGACATGTTTCCTGG
AATTGGACGAAAAACCGCTGAAACGATTATTAATCATTTGGGCCCGGAAGCGATTCGCAAGATTATGGAAAATGAAGATG
TTTTGGATGAAGTTCCGCGTCTTAACGCTGAAAAAAAAGAGACACTTGTTTCCGTTCTTCGGGATAATCTTGGTTTAGAG
CGGACCATTGTCAAATTGAATGAATGGGGATTTGGACCGCAGGTTGCGATGAGGATTTATCAAACATATAGAGAAGTAAC
GATTGAAAAGCTGACTGAAAATCCATATCGGCTTATTGAAGATGTGGAAGGAGTAGGATTTCAACGTGCGGATGAACTTG
GCAGACAGCTGGGAATCACAGGTACTCATACTTCTAGAATTCAAGCTGCAATCCTGCATACAATCAACACAGGGATTCTC
TCTAGCGGTCATGTGTACTTGGAAGCTGTTCAAGTGTTACCGGAAGTCAAACGTCTTTTGGAATCCAGTCAACCTGAAGA
AATTCCCTTCAAACTTATTTCAACAGCTATTATTGAATTAGTAGAAGAGAGCCGTTTGAGTGCAGAACAGCGCAAACTCT
ATTTGCCTTCCTTATATTTTTCAGAACTGGGAATTGCTTCGAAGATGGAACGTATCTTGGACCAGGATCGAGAAAATACA
TTTCCGTCCTCAGAAATGAGAAAAGCCATCGGAGAAACGGAAGAACGTCTGGACGTTAACTATGCAGAAACGCAAATTGC
GGCTATTGAACAAGCGCTTAATTCGCCTGCCATGATCTTAACGGGGGGACCGGGAACAGGGAAAACGACAGTCGTAAGAG
GTCTCGTTGAAGTGTACGCAGAGCTTCATGGCTTGACGCTTGATCCGAAAGAGTATGCCAAAAAGGAAGAGCCGTTTCCG
ATCATCTTAGCTGCGCCTACTGGGCGCGCTGCAAAGAGACTATCAGAGTCTACCGGTCTGCCAGCAATGACAATCCATCG
GCTTCTAGGCTTTACCGGGCAAGAAAAAGAAGAAGAAACCGAACGTGAAATCAAAGCGAGACTGGTTATTATTGACGAGG
CATCTATGCTGGATACGTGGCTCGCGCATCAGTTATTGAAAGCAATCGATGATGATGCTCAAATTTTGTTTGTCGGAGAC
CAAGACCAGCTTCCTTCTGTAGGCCCTGGGCAAGTGTTGCGTGATTTTTTAGAGTCCGGCACAATACCTGTTGTTGAACT
GACTGAAATTTATCGCCAAAGTGCTGGTTCGACAATTATTGAACTGGCGCATGCCATCAAAAAGTCTGAACCGCTTGGTG
ATTTAGCGATGAAAACATCTGACCGTTCATTTATCCGGACTGATGCAGACCAAGTAACGACCGCAGTCAGCCAGATTGTT
AAAAATGCATTAGCAAAAGGTCAAGCGATTAAGGATATTCAAGTGTTGGCACCAATGTACAAAGGTCCTGCAGGCATTGA
TGCGCTGAATTCGATGATTCAGGAAATGGTGAATCCTGCTTCTTCCGGCCGCAAGGAAGTGACGTTCGGAGATGTTGTAT
ACCGAATCGGAGACCGTGTGCTGCAACTCGTCAATCAGCCAGAAAGCAATGTCTTTAATGGGGATATGGGTGAAGTGATC
TCAATCCTGAAAGCCAAAGAGACGATTGAGAAAAAAGATCTGATGATTGTCTCGTTTGACGGGATTGAAGTGACCTACGA
ACGATCGGATTTAAATCAGTTAACGCTGGCCTATTGCTGCTCTATTCATAAGTCACAGGGAAGTGAATTCCCTACAGTCA
TTATGCCGGTTGTCCGCAGTCATCGTAAAATGCTTCGCCGCAATTTACTGTACACAGGGATTACTCGAGCCAAAAACTTT
CTAATTCTTTGTGGCAGCCCTAACGAATTTGCAGAAGGCATCGCTCGGATGGACGAGCGTGAAAGGCAGACGACTCTTAA
AGAACGGCTGCGCGGGGAAAGCCTGGAGCCTGTTGCATCTGATACACCTAATGCTGAGACGACTATCTCTGATCGAGAAG
TATCCGCTAATACAGCTGATGCTTTGACTGATGCATCCGTTCAAACAGGTCCAGCAGGTGAAACCGTGGAAGTTGTTCAA
TCCCAAAAGGAACTGCCGCATGTTTTATCTATTGAAACGATTTTGGATGTGGACCCGATGGTAGGGATGAATGGTGAAAG
TCCTTATGATTTTATGGTGAGTGTGGATTGA

Domains

Predicted by InterproScan.

• AAA domain (AAA_30) (341-547)

• UvrD-like helicase C-terminal domain (UvrD_C_2) (677-724)

• ATP-dependent RecD-like DNA helicase SH3 domain (SH3_13) (589-657)

• Helix-hairpin-helix containing domain (HHH_RecD2) (158-246)

Similar proteins

Only experimentally validated proteins are listed.

Protein	Organism	Identities (%)	Coverage (%)	Ha-value
recD2	Bacillus subtilis subsp. subtilis str. 168	51.267	99.163	0.508