Detailed information
Bioinformatically predicted
Overview
| Name | codY | Type | Regulator |
| Locus tag | PJW02_RS11180 | Genome accession | NZ_CP116313 |
| Coordinates | 2085877..2086656 (+) | Length | 259 a.a. |
| NCBI ID | WP_000421290.1 | Uniprot ID | A0A9W5VKA1 |
| Organism | Bacillus thuringiensis strain Lip | ||
| Function | repression of comK (predicted from homology) Competence regulation |
||
Related MGE
Note: This gene co-localizes with putative mobile genetic elements (MGEs) in the genome predicted by VRprofile2, as detailed below.
Gene-MGE association summary
| MGE type | MGE coordinates | Gene coordinates | Relative position | Distance (bp) |
|---|---|---|---|---|
| ICE | 2044431..2102102 | 2085877..2086656 | within | 0 |
Gene organization within MGE regions
Location: 2044431..2102102
| Locus tag | Gene name | Coordinates (strand) | Size (bp) | Protein ID | Product | Description |
|---|---|---|---|---|---|---|
| PJW02_RS10980 (PJW02_10980) | rsmB | 2044653..2045987 (+) | 1335 | WP_001249668.1 | 16S rRNA (cytosine(967)-C(5))-methyltransferase RsmB | - |
| PJW02_RS10985 (PJW02_10985) | rlmN | 2045992..2047080 (+) | 1089 | WP_000450541.1 | 23S rRNA (adenine(2503)-C(2))-methyltransferase RlmN | - |
| PJW02_RS10990 (PJW02_10990) | - | 2047085..2047837 (+) | 753 | WP_000648703.1 | Stp1/IreP family PP2C-type Ser/Thr phosphatase | - |
| PJW02_RS10995 (PJW02_10995) | pknB | 2047846..2049819 (+) | 1974 | WP_000904748.1 | Stk1 family PASTA domain-containing Ser/Thr kinase | - |
| PJW02_RS11000 (PJW02_11000) | rsgA | 2050066..2050947 (+) | 882 | WP_001113932.1 | ribosome small subunit-dependent GTPase A | - |
| PJW02_RS11005 (PJW02_11005) | rpe | 2050950..2051594 (+) | 645 | WP_000589974.1 | ribulose-phosphate 3-epimerase | - |
| PJW02_RS11010 (PJW02_11010) | - | 2051664..2052344 (+) | 681 | WP_002132739.1 | thiamine diphosphokinase | - |
| PJW02_RS11015 (PJW02_11015) | spoVM | 2052411..2052491 (+) | 81 | WP_001213599.1 | stage V sporulation protein SpoVM | - |
| PJW02_RS11020 (PJW02_11020) | rpmB | 2052565..2052753 (-) | 189 | WP_000124776.1 | 50S ribosomal protein L28 | - |
| PJW02_RS11025 (PJW02_11025) | - | 2053130..2053492 (+) | 363 | WP_000021109.1 | Asp23/Gls24 family envelope stress response protein | - |
| PJW02_RS11030 (PJW02_11030) | - | 2053515..2055191 (+) | 1677 | WP_000027129.1 | DAK2 domain-containing protein | - |
| PJW02_RS11035 (PJW02_11035) | recG | 2055482..2057530 (+) | 2049 | WP_001000811.1 | ATP-dependent DNA helicase RecG | - |
| PJW02_RS11040 (PJW02_11040) | fapR | 2057619..2058212 (+) | 594 | WP_000747349.1 | transcription factor FapR | - |
| PJW02_RS11045 (PJW02_11045) | plsX | 2058209..2059201 (+) | 993 | WP_000684098.1 | phosphate acyltransferase PlsX | - |
| PJW02_RS11050 (PJW02_11050) | fabD | 2059216..2060160 (+) | 945 | WP_000515905.1 | ACP S-malonyltransferase | - |
| PJW02_RS11055 (PJW02_11055) | fabG | 2060160..2060900 (+) | 741 | WP_000911768.1 | 3-oxoacyl-[acyl-carrier-protein] reductase | - |
| PJW02_RS11060 (PJW02_11060) | acpP | 2060970..2061203 (+) | 234 | WP_000786062.1 | acyl carrier protein | - |
| PJW02_RS11065 (PJW02_11065) | rncS | 2061262..2061999 (+) | 738 | WP_001146875.1 | ribonuclease III | - |
| PJW02_RS11070 (PJW02_11070) | - | 2062146..2062607 (+) | 462 | Protein_2107 | AAA family ATPase | - |
| PJW02_RS11075 (PJW02_11075) | ltrA | 2063311..2065116 (+) | 1806 | WP_000108316.1 | group II intron reverse transcriptase/maturase | - |
| PJW02_RS11080 (PJW02_11080) | smc | 2065214..2068321 (+) | 3108 | Protein_2109 | chromosome segregation protein SMC | - |
| PJW02_RS11085 (PJW02_11085) | ftsY | 2068337..2069326 (+) | 990 | WP_000007655.1 | signal recognition particle-docking protein FtsY | - |
| PJW02_RS11090 (PJW02_11090) | - | 2069460..2069792 (+) | 333 | WP_000891062.1 | putative DNA-binding protein | - |
| PJW02_RS11095 (PJW02_11095) | ffh | 2069805..2071154 (+) | 1350 | WP_000863460.1 | signal recognition particle protein | - |
| PJW02_RS11100 (PJW02_11100) | rpsP | 2071256..2071528 (+) | 273 | WP_000268750.1 | 30S ribosomal protein S16 | - |
| PJW02_RS11105 (PJW02_11105) | - | 2071543..2071770 (+) | 228 | WP_000737401.1 | KH domain-containing protein | - |
| PJW02_RS11110 (PJW02_11110) | rimM | 2071891..2072406 (+) | 516 | WP_000170278.1 | ribosome maturation factor RimM | - |
| PJW02_RS11115 (PJW02_11115) | trmD | 2072406..2073140 (+) | 735 | WP_000686903.1 | tRNA (guanosine(37)-N1)-methyltransferase TrmD | - |
| PJW02_RS11120 (PJW02_11120) | rplS | 2073287..2073631 (+) | 345 | WP_001186516.1 | 50S ribosomal protein L19 | - |
| PJW02_RS11125 (PJW02_11125) | lepB | 2073733..2074284 (+) | 552 | WP_000711851.1 | signal peptidase I | - |
| PJW02_RS11130 (PJW02_11130) | ylqF | 2074305..2075195 (+) | 891 | WP_000236702.1 | ribosome biogenesis GTPase YlqF | - |
| PJW02_RS11135 (PJW02_11135) | - | 2075252..2076025 (+) | 774 | WP_001193513.1 | ribonuclease HII | - |
| PJW02_RS11140 (PJW02_11140) | sucC | 2076220..2077380 (+) | 1161 | WP_001020791.1 | ADP-forming succinate--CoA ligase subunit beta | - |
| PJW02_RS11145 (PJW02_11145) | sucD | 2077400..2078302 (+) | 903 | WP_000115178.1 | succinate--CoA ligase subunit alpha | - |
| PJW02_RS11150 (PJW02_11150) | dprA | 2078390..2079259 (+) | 870 | WP_000818039.1 | DNA-processing protein DprA | - |
| PJW02_RS11155 (PJW02_11155) | topA | 2079404..2081482 (+) | 2079 | WP_001286963.1 | type I DNA topoisomerase | - |
| PJW02_RS11160 (PJW02_11160) | trmFO | 2081531..2082835 (+) | 1305 | WP_000213002.1 | FADH(2)-oxidizing methylenetetrahydrofolate--tRNA-(uracil(54)-C(5))- methyltransferase TrmFO | - |
| PJW02_RS11165 (PJW02_11165) | xerC | 2082901..2083800 (+) | 900 | WP_001101241.1 | tyrosine recombinase XerC | - |
| PJW02_RS11170 (PJW02_11170) | hslV | 2083843..2084385 (+) | 543 | WP_000526272.1 | ATP-dependent protease proteolytic subunit HslV | - |
| PJW02_RS11175 (PJW02_11175) | hslU | 2084408..2085799 (+) | 1392 | WP_000550087.1 | ATP-dependent protease ATPase subunit HslU | - |
| PJW02_RS11180 (PJW02_11180) | codY | 2085877..2086656 (+) | 780 | WP_000421290.1 | GTP-sensing pleiotropic transcriptional regulator CodY | Regulator |
| PJW02_RS11185 (PJW02_11185) | rpsB | 2087005..2087706 (+) | 702 | WP_000111485.1 | 30S ribosomal protein S2 | - |
| PJW02_RS11190 (PJW02_11190) | tsf | 2087810..2088697 (+) | 888 | WP_001018578.1 | translation elongation factor Ts | - |
| PJW02_RS11195 (PJW02_11195) | pyrH | 2088764..2089486 (+) | 723 | WP_000042668.1 | UMP kinase | - |
| PJW02_RS11200 (PJW02_11200) | frr | 2089489..2090046 (+) | 558 | WP_000531501.1 | ribosome recycling factor | - |
| PJW02_RS11205 (PJW02_11205) | uppS | 2090132..2090908 (+) | 777 | WP_000971296.1 | isoprenyl transferase | - |
| PJW02_RS11210 (PJW02_11210) | cdsA | 2090926..2091717 (+) | 792 | WP_000813592.1 | phosphatidate cytidylyltransferase | - |
| PJW02_RS11215 (PJW02_11215) | dxr | 2091741..2092883 (+) | 1143 | WP_000790372.1 | 1-deoxy-D-xylulose-5-phosphate reductoisomerase | - |
| PJW02_RS11220 (PJW02_11220) | rseP | 2092901..2094157 (+) | 1257 | WP_001090245.1 | RIP metalloprotease RseP | - |
| PJW02_RS11225 (PJW02_11225) | - | 2094267..2095967 (+) | 1701 | WP_000814333.1 | proline--tRNA ligase | - |
| PJW02_RS11230 (PJW02_11230) | - | 2096092..2100393 (+) | 4302 | WP_000060004.1 | PolC-type DNA polymerase III | - |
| PJW02_RS11235 (PJW02_11235) | rimP | 2100730..2101200 (+) | 471 | WP_000359096.1 | ribosome maturation factor RimP | - |
Sequence
Protein
Download Length: 259 a.a. Molecular weight: 28793.05 Da Isoelectric Point: 4.7165
>NTDB_id=776570 PJW02_RS11180 WP_000421290.1 2085877..2086656(+) (codY) [Bacillus thuringiensis strain Lip]
MELLAKTRKLNALLQSAAGKPVNFREMSDTMCEVIEANVFVVSRRGKLLGYAIHQQIENERMKQMLAERQFPEEYTQSLF
NITETSSNLDVNSAYTAFPVENRELFGQGLTTIVPIVGGGERLGTLVLARLGQEFLDDDLILAEYSSTVVGMEILREKAE
EIEEEARSKAVVQMAISSLSYSELEAIEHIFEELNGTEGLLVASKIADRVGITRSVIVNALRKLESAGVIESRSLGMKGT
YIKVLNDKFLQELAKLKTN
MELLAKTRKLNALLQSAAGKPVNFREMSDTMCEVIEANVFVVSRRGKLLGYAIHQQIENERMKQMLAERQFPEEYTQSLF
NITETSSNLDVNSAYTAFPVENRELFGQGLTTIVPIVGGGERLGTLVLARLGQEFLDDDLILAEYSSTVVGMEILREKAE
EIEEEARSKAVVQMAISSLSYSELEAIEHIFEELNGTEGLLVASKIADRVGITRSVIVNALRKLESAGVIESRSLGMKGT
YIKVLNDKFLQELAKLKTN
Nucleotide
Download Length: 780 bp
>NTDB_id=776570 PJW02_RS11180 WP_000421290.1 2085877..2086656(+) (codY) [Bacillus thuringiensis strain Lip]
ATGGAATTATTAGCAAAAACGAGAAAATTAAATGCGTTATTACAGAGCGCAGCAGGGAAGCCTGTAAACTTTAGAGAAAT
GTCTGACACAATGTGTGAAGTAATCGAAGCAAACGTATTCGTAGTTAGCCGTCGTGGTAAATTACTAGGTTATGCAATTC
ACCAACAAATCGAAAACGAACGCATGAAGCAAATGCTTGCAGAACGTCAATTCCCAGAAGAATATACACAAAGCTTATTC
AACATTACAGAAACATCTTCAAACTTAGATGTGAACAGTGCTTACACAGCATTCCCAGTAGAAAACAGAGAATTATTTGG
TCAAGGTTTAACTACAATCGTACCAATCGTTGGTGGCGGTGAGCGTCTAGGTACATTAGTATTAGCTCGTCTTGGTCAAG
AGTTCTTAGATGATGATTTAATCCTTGCTGAGTACAGCTCAACTGTTGTAGGTATGGAAATTTTACGTGAAAAAGCAGAA
GAAATCGAAGAGGAAGCACGTAGTAAAGCTGTTGTTCAAATGGCGATCAGCTCATTATCTTACAGTGAGTTAGAAGCGAT
TGAGCACATCTTCGAAGAATTAAATGGAACAGAAGGTTTACTTGTTGCAAGTAAAATTGCTGATCGCGTAGGAATTACTC
GTTCTGTAATCGTAAATGCACTACGTAAATTAGAAAGTGCTGGTGTTATTGAGTCTCGTTCTTTAGGTATGAAAGGAACA
TACATTAAAGTGCTAAACGACAAGTTTCTACAGGAACTTGCTAAATTAAAAACAAACTAA
ATGGAATTATTAGCAAAAACGAGAAAATTAAATGCGTTATTACAGAGCGCAGCAGGGAAGCCTGTAAACTTTAGAGAAAT
GTCTGACACAATGTGTGAAGTAATCGAAGCAAACGTATTCGTAGTTAGCCGTCGTGGTAAATTACTAGGTTATGCAATTC
ACCAACAAATCGAAAACGAACGCATGAAGCAAATGCTTGCAGAACGTCAATTCCCAGAAGAATATACACAAAGCTTATTC
AACATTACAGAAACATCTTCAAACTTAGATGTGAACAGTGCTTACACAGCATTCCCAGTAGAAAACAGAGAATTATTTGG
TCAAGGTTTAACTACAATCGTACCAATCGTTGGTGGCGGTGAGCGTCTAGGTACATTAGTATTAGCTCGTCTTGGTCAAG
AGTTCTTAGATGATGATTTAATCCTTGCTGAGTACAGCTCAACTGTTGTAGGTATGGAAATTTTACGTGAAAAAGCAGAA
GAAATCGAAGAGGAAGCACGTAGTAAAGCTGTTGTTCAAATGGCGATCAGCTCATTATCTTACAGTGAGTTAGAAGCGAT
TGAGCACATCTTCGAAGAATTAAATGGAACAGAAGGTTTACTTGTTGCAAGTAAAATTGCTGATCGCGTAGGAATTACTC
GTTCTGTAATCGTAAATGCACTACGTAAATTAGAAAGTGCTGGTGTTATTGAGTCTCGTTCTTTAGGTATGAAAGGAACA
TACATTAAAGTGCTAAACGACAAGTTTCTACAGGAACTTGCTAAATTAAAAACAAACTAA
3D structure
| Source | ID | Structure |
|---|
Similar proteins
Only experimentally validated proteins are listed.
| Protein | Organism | Identities (%) | Coverage (%) | Ha-value |
|---|---|---|---|---|
| codY | Bacillus subtilis subsp. subtilis str. 168 |
81.467 |
100 |
0.815 |
| codY | Lactococcus lactis subsp. lactis strain DGCC12653 |
46.667 |
98.456 |
0.459 |