Detailed information    

insolico Bioinformatically predicted

Overview

Name   comB2   Type   Machinery gene
Locus tag   PHA49_RS07020 Genome accession   NZ_CP116234
Coordinates   1471948..1472229 (-) Length   93 a.a.
NCBI ID   WP_001272686.1    Uniprot ID   G2MDJ3
Organism   Helicobacter pylori strain H390d     
Function   transformation-associated type IV transport system (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 1466948..1477229
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  PHA49_RS07000 (PHA49_07000) - 1467656..1468996 (-) 1341 WP_271331170.1 COG3014 family protein -
  PHA49_RS07010 (PHA49_07010) comB4 1469319..1471682 (-) 2364 WP_271330678.1 VirB4 family type IV secretion/conjugal transfer ATPase Machinery gene
  PHA49_RS07015 (PHA49_07015) comB3 1471685..1471948 (-) 264 WP_000584971.1 hypothetical protein Machinery gene
  PHA49_RS07020 (PHA49_07020) comB2 1471948..1472229 (-) 282 WP_001272686.1 TrbC/VirB2 family protein Machinery gene
  PHA49_RS07025 (PHA49_07025) - 1472374..1473201 (-) 828 WP_271330679.1 DUF5718 family protein -
  PHA49_RS07030 (PHA49_07030) - 1473292..1474344 (-) 1053 WP_060759769.1 MnmA/TRMU family protein -
  PHA49_RS07035 (PHA49_07035) dnaG 1474341..1476020 (-) 1680 WP_271330680.1 DNA primase -
  PHA49_RS07040 (PHA49_07040) groES 1476295..1476651 (+) 357 WP_024774040.1 co-chaperone GroES -

Sequence

Protein


Download         Length: 93 a.a.        Molecular weight: 10539.81 Da        Isoelectric Point: 9.1450

>NTDB_id=776270 PHA49_RS07020 WP_001272686.1 1471948..1472229(-) (comB2) [Helicobacter pylori strain H390d]
MSAHFLKIIFLVGMCVSSLFAEGLEGFFNALEAQLKSPIAKGILMVIFIGIAIYVWRNLDRWKEILFTILGVVFGIFLFF
KAPSLANWFMGIF

Nucleotide


Download         Length: 282 bp        

>NTDB_id=776270 PHA49_RS07020 WP_001272686.1 1471948..1472229(-) (comB2) [Helicobacter pylori strain H390d]
ATGTCCGCTCATTTTTTAAAAATCATTTTTTTAGTAGGCATGTGCGTTTCAAGTTTGTTCGCTGAAGGATTAGAAGGGTT
TTTTAACGCCCTAGAAGCCCAGCTCAAAAGCCCCATCGCTAAGGGAATTTTAATGGTGATTTTCATAGGGATCGCTATTT
ATGTGTGGAGGAATTTAGACCGGTGGAAAGAGATTTTATTCACGATCCTTGGCGTGGTGTTTGGGATTTTTTTATTCTTT
AAAGCCCCGAGTTTAGCGAATTGGTTCATGGGAATTTTTTAA

Domains

Predicted by InterproScan.

TrbC/VIRB2 pilin (TrbC)

(6-89)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB G2MDJ3

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comB2 Helicobacter pylori 26695

98.925

100

0.989