Detailed information NTG0077573

Bioinformatically predicted

Overview

• Name: pilD
• Type: Machinery gene
• Locus tag: MWM06_RS00570
• Genome accession: NZ_AP025596
• Coordinates: 106429..107490 (+)
• Length: 353 a.a.
• NCBI ID: WP_244341080.1
• Uniprot ID: -
• Organism: Thermus thermophilus strain SNM1-1
• Function: assembly of type IV pilus (predicted from homology) DNA binding and uptake

Genomic Context

Location: 101429..112490

Locus tag	Gene name	Coordinates (strand)	Size (bp)	Protein ID	Product	Description
MWM06_RS00550 (TthSNM11_01060)	-	101944..102726 (+)	783	WP_244360924.1	RNA methyltransferase	-
MWM06_RS00555 (TthSNM11_01070)	groES	102824..103129 (+)	306	WP_011174076.1	co-chaperone GroES	-
MWM06_RS00560 (TthSNM11_01080)	groL	103142..104773 (+)	1632	WP_011174077.1	chaperonin GroEL	-
MWM06_RS00565 (TthSNM11_01090)	-	104837..106369 (-)	1533	WP_244341079.1	carboxypeptidase M32	-
MWM06_RS00570 (TthSNM11_01100)	pilD	106429..107490 (+)	1062	WP_244341080.1	A24 family peptidase	Machinery gene
MWM06_RS00575 (TthSNM11_01110)	-	107528..108031 (+)	504	WP_244341081.1	DUF2939 domain-containing protein	-
MWM06_RS00580 (TthSNM11_01120)	-	108045..108965 (+)	921	WP_011227819.1	nitroreductase family protein	-
MWM06_RS00585 (TthSNM11_01130)	-	108919..109695 (-)	777	WP_244360927.1	C40 family peptidase	-
MWM06_RS00590 (TthSNM11_01140)	-	109696..110454 (-)	759	WP_041443621.1	DUF721 domain-containing protein	-
MWM06_RS00595 (TthSNM11_01150)	recF	110439..111470 (-)	1032	WP_244341083.1	DNA replication and repair protein RecF	Machinery gene

Sequence

Protein

• Length: 353 a.a.
• Molecular weight: 37742.03 Da
• Isoelectric Point: 8.4420

>NTDB_id=77573 MWM06_RS00570 WP_244341080.1 106429..107490(+) (pilD) [Thermus thermophilus strain SNM1-1]
MWPLFALFLGLAVGSFLNVVIHRLPRGESVAYPPSRCPQCGHRLGPWDLVPVLSYLALKGRCRYCARPISPRYPLVEALT
GGLFLLASLFYPPGVEALLVFLFLAFLVALAFIDVDTFELPDPLTYGLLFLGLLASWALAFPLPFRESLDGSLMAAGGLA
LVAGYGNFFLRRFKEGRAEVPVGPHQVHMAALFGALLGPGVGMALAFLAWALSARTGRAVALPDRLTLPLLPLAFLLAPA
LGLDFLESLKGSLLAAGGLALAGGLYWAFRPLPEEEEPVAMGYGDVKLLGALGAWLGPYAFLALFLGVFAGALLGLLLRQ
RKLPFGPYLALGGVVAFFFGEALWGAYLRLLGV

Nucleotide

• Length: 1062 bp

>NTDB_id=77573 MWM06_RS00570 WP_244341080.1 106429..107490(+) (pilD) [Thermus thermophilus strain SNM1-1]
ATGTGGCCCCTTTTTGCCCTGTTCCTCGGCCTCGCGGTGGGTTCGTTTCTCAACGTGGTCATCCACCGCCTGCCCCGGGG
GGAGTCCGTCGCCTACCCCCCGTCCCGCTGCCCCCAGTGCGGCCACCGCCTGGGGCCTTGGGACCTGGTCCCCGTCCTCT
CCTACCTCGCCCTAAAGGGGCGGTGCCGCTACTGCGCCCGTCCCATCTCCCCCCGCTACCCCCTGGTGGAGGCCCTCACG
GGGGGGCTTTTTCTCCTCGCAAGCCTCTTCTACCCCCCTGGGGTGGAGGCCCTCTTGGTCTTCCTCTTCCTCGCCTTTCT
CGTGGCCCTCGCCTTCATTGACGTGGACACCTTTGAGCTTCCCGATCCCCTCACCTACGGCCTCCTCTTCCTGGGGCTTT
TGGCCTCCTGGGCGCTGGCCTTCCCCCTCCCCTTTAGGGAGAGCCTGGACGGAAGCCTCATGGCCGCCGGGGGGCTCGCC
CTGGTGGCGGGTTACGGGAACTTTTTCCTGAGGCGCTTTAAGGAGGGGAGGGCCGAGGTCCCCGTGGGGCCCCACCAGGT
CCACATGGCGGCCCTCTTTGGGGCGCTCTTGGGCCCAGGGGTGGGGATGGCCCTCGCCTTCCTCGCTTGGGCCCTCTCCG
CCCGCACGGGGCGGGCGGTGGCCCTCCCCGACCGGCTCACCCTGCCCCTTTTGCCCCTCGCCTTCCTCCTTGCCCCCGCC
CTAGGCCTGGACTTCCTGGAAAGCCTTAAGGGAAGCCTCCTCGCTGCCGGGGGGCTCGCCCTCGCCGGGGGGCTTTACTG
GGCCTTCCGGCCCCTTCCCGAGGAGGAGGAGCCCGTGGCCATGGGCTACGGGGACGTGAAGCTTCTGGGGGCCCTCGGGG
CCTGGCTTGGCCCTTACGCCTTCCTCGCCCTCTTCCTCGGGGTCTTCGCCGGGGCGCTTCTGGGCCTTCTCCTTAGGCAA
AGGAAGCTCCCCTTCGGCCCCTACCTCGCCCTCGGGGGGGTGGTGGCCTTCTTCTTCGGGGAGGCCCTCTGGGGGGCGTA
CCTGCGCCTTCTGGGCGTTTGA

Domains

Predicted by InterProScan.

• Bacterial Peptidase A24 N-terminal domain (A24_N_bact) (9-88)

• Type IV leader peptidase family (Peptidase_A24) (207-316)

Similar proteins

Only experimentally validated proteins are listed.

Protein	Organism	Identities (%)	Coverage (%)	Ha-value
pilD	Deinococcus radiodurans R1 = ATCC 13939 = DSM 20539	44.648	100	0.484