Detailed information    

insolico Bioinformatically predicted

Overview

Name   pilX   Type   Machinery gene
Locus tag   PGW89_RS09540 Genome accession   NZ_CP116040
Coordinates   2037377..2038102 (+) Length   241 a.a.
NCBI ID   WP_113996606.1    Uniprot ID   A0A4P7B0M8
Organism   Acinetobacter haemolyticus strain HW-2     
Function   assembly of type IV pilus (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 2032377..2043102
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  PGW89_RS09515 (PGW89_09515) comE 2034051..2034590 (+) 540 WP_113996602.1 prepilin-type N-terminal cleavage/methylation domain-containing protein Machinery gene
  PGW89_RS09520 (PGW89_09520) pilE 2034593..2035027 (+) 435 WP_109441034.1 type IV pilin protein Machinery gene
  PGW89_RS09525 (PGW89_09525) - 2035302..2035766 (+) 465 WP_113996603.1 GspH/FimT family protein -
  PGW89_RS09530 (PGW89_09530) pilV 2035763..2036263 (+) 501 WP_113996604.1 type IV pilus modification protein PilV Machinery gene
  PGW89_RS09535 (PGW89_09535) - 2036412..2037380 (+) 969 WP_265735950.1 PilW family protein -
  PGW89_RS09540 (PGW89_09540) pilX 2037377..2038102 (+) 726 WP_113996606.1 pilus assembly protein PilX Machinery gene
  PGW89_RS09545 (PGW89_09545) - 2038116..2042315 (+) 4200 WP_113996607.1 PilC/PilY family type IV pilus protein -
  PGW89_RS09550 (PGW89_09550) comE 2042299..2042778 (+) 480 WP_113996608.1 prepilin-type N-terminal cleavage/methylation domain-containing protein Machinery gene

Sequence

Protein


Download         Length: 241 a.a.        Molecular weight: 26079.97 Da        Isoelectric Point: 6.9127

>NTDB_id=775506 PGW89_RS09540 WP_113996606.1 2037377..2038102(+) (pilX) [Acinetobacter haemolyticus strain HW-2]
MIRSERGSTLIVVLMVLLLIMIVGTLAIRQSISSLKLVTNNQIQALLLQSSDAALLALQNPNNTPDIAAANGIVGFFKNE
NHKEAELVFCFSESSPFTLSKGAYLLNSPNWESLGGGACTKDSKSAGRKQVVTQVYIKRATTPTAPFADLARGTEVLGAK
TEESIRLQVFVVSVMQGLLSDTDKILFKKSTAADEGCLVKSIDNAGKNEVAECLKQNKENPLYNMQVAEYRFLSDFEPSG
S

Nucleotide


Download         Length: 726 bp        

>NTDB_id=775506 PGW89_RS09540 WP_113996606.1 2037377..2038102(+) (pilX) [Acinetobacter haemolyticus strain HW-2]
ATGATTCGATCTGAACGAGGTTCAACCCTCATCGTTGTATTGATGGTCTTGTTACTGATTATGATTGTAGGAACATTGGC
AATTCGTCAAAGTATCAGCTCATTGAAATTGGTCACCAATAATCAGATACAAGCATTGTTGTTACAGAGTTCTGATGCAG
CTTTGTTGGCTTTACAAAATCCCAATAATACACCTGATATTGCAGCAGCCAATGGTATTGTCGGTTTCTTTAAAAATGAA
AACCATAAAGAAGCTGAATTGGTATTTTGTTTTTCGGAGAGCAGCCCTTTTACATTGAGTAAAGGGGCATATCTCTTAAA
TAGCCCGAATTGGGAGAGTTTAGGAGGGGGAGCTTGTACTAAAGATTCGAAGTCAGCTGGTCGCAAGCAAGTTGTAACAC
AAGTTTATATTAAACGAGCCACTACACCGACAGCTCCGTTTGCTGATTTGGCGCGTGGCACAGAAGTTTTGGGTGCAAAA
ACTGAAGAAAGCATTCGTTTACAAGTCTTCGTGGTATCGGTGATGCAAGGCTTATTATCGGATACTGATAAAATATTATT
TAAAAAAAGTACTGCAGCTGATGAAGGTTGCTTGGTGAAAAGCATCGACAATGCTGGGAAAAATGAAGTGGCTGAGTGCC
TAAAACAAAATAAAGAGAATCCTCTATATAACATGCAAGTCGCAGAATATCGCTTCTTATCTGACTTTGAGCCATCAGGT
TCATAA

Domains


No domain identified.



Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  pilX Acinetobacter baylyi ADP1

51.464

99.17

0.51