Detailed information    

insolico Bioinformatically predicted

Overview

Name   comF   Type   Machinery gene
Locus tag   PGH12_RS08780 Genome accession   NZ_CP116034
Coordinates   1912493..1913146 (+) Length   217 a.a.
NCBI ID   WP_267599723.1    Uniprot ID   -
Organism   Chryseobacterium sp. CY350     
Function   ssDNA transport into the cell (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 1907493..1918146
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  PGH12_RS08750 (PGH12_08750) - 1907673..1908290 (-) 618 WP_267599728.1 DUF5715 family protein -
  PGH12_RS08755 (PGH12_08755) aqpZ 1908526..1909242 (+) 717 WP_267599727.1 aquaporin Z -
  PGH12_RS08760 (PGH12_08760) - 1909285..1909830 (-) 546 WP_267599726.1 hypothetical protein -
  PGH12_RS08765 (PGH12_08765) - 1909974..1910963 (-) 990 WP_267599725.1 acyl transferase -
  PGH12_RS08770 (PGH12_08770) - 1911153..1911926 (-) 774 WP_267599724.1 UDP-2,3-diacylglucosamine diphosphatase -
  PGH12_RS08775 (PGH12_08775) - 1911951..1912397 (-) 447 WP_047445211.1 6-carboxytetrahydropterin synthase -
  PGH12_RS08780 (PGH12_08780) comF 1912493..1913146 (+) 654 WP_267599723.1 double zinc ribbon domain-containing protein Machinery gene
  PGH12_RS08785 (PGH12_08785) - 1913191..1913439 (-) 249 WP_267599722.1 hypothetical protein -
  PGH12_RS08790 (PGH12_08790) upp 1913449..1914099 (-) 651 WP_267599721.1 uracil phosphoribosyltransferase -
  PGH12_RS08795 (PGH12_08795) der 1914210..1915520 (-) 1311 WP_267599720.1 ribosome biogenesis GTPase Der -
  PGH12_RS08800 (PGH12_08800) - 1915746..1916204 (+) 459 WP_267599719.1 heme-binding domain-containing protein -
  PGH12_RS08805 (PGH12_08805) - 1916208..1916621 (+) 414 WP_267599718.1 DUF393 domain-containing protein -
  PGH12_RS08810 (PGH12_08810) - 1916709..1918145 (-) 1437 WP_267599717.1 alpha-amylase -

Sequence

Protein


Download         Length: 217 a.a.        Molecular weight: 25598.70 Da        Isoelectric Point: 8.3685

>NTDB_id=775436 PGH12_RS08780 WP_267599723.1 1912493..1913146(+) (comF) [Chryseobacterium sp. CY350]
MILDIFFPNRCIHCNRIINGKLLVCNLCFEQIHFTHFEYSEENSLKEKCKLLFPIENAYALMQFEQENLSRKIIHELKYR
SRETTGKILADWVIERLDFKNEKPDLLVTVPLHPKKEKERGYNQLHLFTKVLSDFHTIPFDHHLFKRNHYSKAQALKDKK
HRLETQHTFSLIKNVSNQHILIIDDVFTTGNTLATIAWEILKAGNNKVSILVMAVDE

Nucleotide


Download         Length: 654 bp        

>NTDB_id=775436 PGH12_RS08780 WP_267599723.1 1912493..1913146(+) (comF) [Chryseobacterium sp. CY350]
ATGATTTTAGATATATTTTTTCCGAATCGCTGCATTCACTGTAACAGAATTATCAATGGCAAACTGCTTGTCTGTAATCT
CTGTTTTGAACAAATTCATTTTACTCATTTTGAATATTCTGAAGAAAACAGTTTAAAAGAAAAATGCAAATTGCTGTTTC
CGATCGAGAACGCTTATGCATTGATGCAGTTTGAACAAGAAAATCTCAGTCGGAAAATCATTCATGAGTTAAAATACAGA
AGTCGCGAAACGACAGGAAAAATTCTTGCAGATTGGGTAATTGAGCGTTTGGATTTTAAAAACGAAAAACCTGATTTGTT
GGTAACCGTACCTCTTCATCCCAAAAAAGAGAAAGAGAGAGGGTATAATCAATTGCATCTGTTTACAAAAGTACTTTCAG
ATTTTCATACTATTCCGTTTGATCATCATTTATTTAAGCGAAACCATTACTCAAAGGCTCAAGCGTTAAAAGATAAAAAA
CACCGTCTTGAAACCCAACATACTTTTTCTTTAATTAAAAACGTTTCCAATCAGCATATTTTAATAATTGATGATGTTTT
CACCACAGGAAATACTTTGGCTACAATTGCCTGGGAAATTTTGAAAGCAGGAAATAATAAAGTGAGTATTTTGGTGATGG
CGGTTGATGAATGA

Domains

Predicted by InterproScan.

Double zinc ribbon domain (DZR_2)

(2-34)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comF Riemerella anatipestifer ATCC 11845 = DSM 15868

50.23

100

0.502