Detailed information    

insolico Bioinformatically predicted

Overview

Name   pilD   Type   Machinery gene
Locus tag   QVN10_RS13195 Genome accession   NZ_CP128875
Coordinates   2733889..2734356 (+) Length   155 a.a.
NCBI ID   WP_000340159.1    Uniprot ID   -
Organism   Escherichia coli strain TUM14771     
Function   assembly of type IV pilus (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 2728889..2739356
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  QVN10_RS13150 (QVN10_13150) rplP 2728999..2729409 (-) 411 WP_000941212.1 50S ribosomal protein L16 -
  QVN10_RS13155 (QVN10_13155) rpsC 2729422..2730123 (-) 702 WP_000529945.1 30S ribosomal protein S3 -
  QVN10_RS13160 (QVN10_13160) rplV 2730141..2730473 (-) 333 WP_000447529.1 50S ribosomal protein L22 -
  QVN10_RS13165 (QVN10_13165) rpsS 2730488..2730766 (-) 279 WP_001138117.1 30S ribosomal protein S19 -
  QVN10_RS13170 (QVN10_13170) rplB 2730783..2731604 (-) 822 WP_000301864.1 50S ribosomal protein L2 -
  QVN10_RS13175 (QVN10_13175) rplW 2731622..2731924 (-) 303 WP_000617544.1 50S ribosomal protein L23 -
  QVN10_RS13180 (QVN10_13180) rplD 2731921..2732526 (-) 606 WP_000424395.1 50S ribosomal protein L4 -
  QVN10_RS13185 (QVN10_13185) rplC 2732537..2733166 (-) 630 WP_000579833.1 50S ribosomal protein L3 -
  QVN10_RS13190 (QVN10_13190) rpsJ 2733199..2733510 (-) 312 WP_001181004.1 30S ribosomal protein S10 -
  QVN10_RS13195 (QVN10_13195) pilD 2733889..2734356 (+) 468 WP_000340159.1 A24 family peptidase Machinery gene
  QVN10_RS13200 (QVN10_13200) bfr 2734353..2734829 (-) 477 WP_000675515.1 bacterioferritin -
  QVN10_RS13205 (QVN10_13205) bfd 2734902..2735096 (-) 195 WP_000289090.1 bacterioferritin-associated ferredoxin -
  QVN10_RS13210 (QVN10_13210) tuf 2735279..2736463 (-) 1185 WP_000031783.1 elongation factor Tu -
  QVN10_RS13215 (QVN10_13215) fusA 2736534..2738648 (-) 2115 WP_000124700.1 elongation factor G -
  QVN10_RS13220 (QVN10_13220) rpsG 2738745..2739215 (-) 471 WP_001138043.1 30S ribosomal protein S7 -

Sequence

Protein


Download         Length: 155 a.a.        Molecular weight: 17034.17 Da        Isoelectric Point: 8.1255

>NTDB_id=775431 QVN10_RS13195 WP_000340159.1 2733889..2734356(+) (pilD) [Escherichia coli strain TUM14771]
MDATLPFLILYACLSALLFFWDAKHGLLPDRFTCPLLWSGLLFYQVCNPDGLADALWGAIIGYGTFAVIYWGYRILRHKE
GLGYGDVKFLAALGAWHTWTFLPRLVFLAASFACGAVVIGLLMRGKESLKNPLPFGPFLAAAGFVVGWDSLLAGR

Nucleotide


Download         Length: 468 bp        

>NTDB_id=775431 QVN10_RS13195 WP_000340159.1 2733889..2734356(+) (pilD) [Escherichia coli strain TUM14771]
ATGGACGCTACCCTTCCCTTTCTGATTTTGTACGCTTGTTTATCAGCCCTACTTTTTTTCTGGGATGCAAAGCATGGCTT
GTTACCTGACAGATTTACGTGCCCGTTACTCTGGTCAGGTCTTTTGTTCTATCAGGTTTGTAATCCTGACGGTTTAGCCG
ATGCGTTATGGGGGGCGATTATTGGTTACGGCACATTCGCTGTCATTTACTGGGGGTATCGCATACTGCGTCATAAAGAA
GGATTAGGCTATGGTGATGTGAAGTTTCTCGCCGCCCTTGGTGCCTGGCATACATGGACCTTCTTGCCACGACTGGTTTT
CCTTGCTGCCTCATTCGCTTGCGGAGCCGTAGTTATTGGTCTGCTCATGAGAGGAAAAGAGTCATTAAAAAACCCGCTGC
CGTTTGGGCCATTTCTGGCGGCTGCGGGTTTCGTTGTAGGCTGGGATAGTTTGCTGGCAGGCCGTTAA

Domains

Predicted by InterProScan.

Type IV leader peptidase family (Peptidase_A24)

(11-117)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  pilD Vibrio cholerae strain A1552

44.882

81.935

0.368