Detailed information    

insolico Bioinformatically predicted

Overview

Name   sigH   Type   Regulator
Locus tag   PGA57_RS08620 Genome accession   NZ_CP116016
Coordinates   1634997..1635554 (-) Length   185 a.a.
NCBI ID   WP_039098349.1    Uniprot ID   -
Organism   Latilactobacillus curvatus strain SRCM217410     
Function   promote expression of competence genes (predicted from homology)   
Competence regulation

Genomic Context

Location: 1629997..1640554
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  PGA57_RS08595 (PGA57_08595) - 1630311..1630943 (+) 633 WP_069468434.1 CPBP family intramembrane glutamic endopeptidase -
  PGA57_RS08600 (PGA57_08600) - 1630996..1631643 (-) 648 WP_004265080.1 redox-sensing transcriptional repressor Rex -
  PGA57_RS08605 (PGA57_08605) - 1631839..1633782 (+) 1944 WP_271260007.1 ABC-F family ATP-binding cassette domain-containing protein -
  PGA57_RS08610 (PGA57_08610) - 1633933..1634292 (-) 360 WP_039098351.1 YccF domain-containing protein -
  PGA57_RS08615 (PGA57_08615) - 1634399..1634716 (-) 318 WP_004265021.1 PTS sugar transporter subunit IIB -
  PGA57_RS08620 (PGA57_08620) sigH 1634997..1635554 (-) 558 WP_039098349.1 sigma-70 family RNA polymerase sigma factor Regulator
  PGA57_RS08625 (PGA57_08625) - 1635630..1636163 (-) 534 WP_065825220.1 NYN domain-containing protein -
  PGA57_RS08630 (PGA57_08630) rlmB 1636167..1637054 (-) 888 WP_080752752.1 23S rRNA (guanosine(2251)-2'-O)-methyltransferase RlmB -
  PGA57_RS08635 (PGA57_08635) - 1637041..1637448 (-) 408 WP_004265086.1 Mini-ribonuclease 3 -
  PGA57_RS08640 (PGA57_08640) cysS 1637445..1638851 (-) 1407 WP_069468437.1 cysteine--tRNA ligase -
  PGA57_RS08645 (PGA57_08645) - 1639392..1640504 (-) 1113 WP_039098346.1 PIN/TRAM domain-containing protein -

Sequence

Protein


Download         Length: 185 a.a.        Molecular weight: 21752.94 Da        Isoelectric Point: 6.6648

>NTDB_id=775331 PGA57_RS08620 WP_039098349.1 1634997..1635554(-) (sigH) [Latilactobacillus curvatus strain SRCM217410]
MESAKRDANLIQAVVENDSEALDVLFKAYLPMVYRTFTPYYIRLFDEDDWLQEARIVCYETCQCYDQNCGKSFGGFYKLR
FHHHVLNLIRKELAQKRRVDQQALLFDCCPECNALAEDTVAYYQSTVEMRAYLETLSALELVAFRVLTGQLAVEQACRQL
DCTFEQMKRAQSRCQTKLKRFYTKQ

Nucleotide


Download         Length: 558 bp        

>NTDB_id=775331 PGA57_RS08620 WP_039098349.1 1634997..1635554(-) (sigH) [Latilactobacillus curvatus strain SRCM217410]
ATGGAATCAGCAAAACGTGATGCAAACTTAATTCAAGCGGTGGTTGAAAACGATTCTGAGGCGTTGGATGTTTTATTTAA
AGCCTACCTACCAATGGTTTATCGCACCTTTACTCCATATTATATTCGCTTATTTGATGAGGACGATTGGTTACAAGAAG
CGCGAATCGTCTGTTATGAGACTTGCCAGTGTTATGATCAAAATTGCGGCAAAAGTTTTGGTGGTTTTTATAAATTACGC
TTTCACCACCACGTATTAAACTTGATTCGCAAAGAACTTGCTCAGAAACGACGGGTCGATCAGCAAGCCCTGTTATTTGA
TTGTTGTCCGGAATGCAATGCGCTCGCTGAAGATACCGTTGCATACTATCAGTCAACGGTTGAAATGCGGGCGTACTTAG
AGACACTATCTGCTTTAGAGTTAGTGGCCTTTCGGGTTTTGACGGGGCAACTAGCAGTTGAGCAAGCGTGTCGTCAGCTA
GATTGCACGTTTGAACAGATGAAACGGGCACAATCGCGTTGCCAGACAAAATTAAAACGATTCTATACTAAACAATAA

Domains


No domain identified.



Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  sigH Latilactobacillus sakei subsp. sakei 23K

73.077

98.378

0.719