Detailed information    

insolico Bioinformatically predicted

Overview

Name   codY   Type   Regulator
Locus tag   PF996_RS08465 Genome accession   NZ_CP116014
Coordinates   1672019..1672798 (+) Length   259 a.a.
NCBI ID   WP_017417775.1    Uniprot ID   A0A411A618
Organism   Bacillus velezensis strain SRCM124633     
Function   repression of comK (predicted from homology)   
Competence regulation

Genomic Context

Location: 1667019..1677798
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  PF996_RS08445 (PF996_08445) trmFO 1667706..1669013 (+) 1308 WP_271265764.1 FADH(2)-oxidizing methylenetetrahydrofolate--tRNA-(uracil(54)-C(5))- methyltransferase TrmFO -
  PF996_RS08450 (PF996_08450) xerC 1669083..1670000 (+) 918 WP_007409774.1 tyrosine recombinase XerC -
  PF996_RS08455 (PF996_08455) hslV 1670016..1670561 (+) 546 WP_003154267.1 ATP-dependent protease subunit HslV -
  PF996_RS08460 (PF996_08460) hslU 1670578..1671981 (+) 1404 WP_061862191.1 HslU--HslV peptidase ATPase subunit -
  PF996_RS08465 (PF996_08465) codY 1672019..1672798 (+) 780 WP_017417775.1 GTP-sensing pleiotropic transcriptional regulator CodY Regulator
  PF996_RS08470 (PF996_08470) flgB 1673152..1673541 (+) 390 WP_003154260.1 flagellar basal body rod protein FlgB -
  PF996_RS08475 (PF996_08475) flgC 1673541..1673993 (+) 453 WP_003154259.1 flagellar basal body rod protein FlgC -
  PF996_RS08480 (PF996_08480) fliE 1674004..1674324 (+) 321 WP_025649464.1 flagellar hook-basal body complex protein FliE -
  PF996_RS08485 (PF996_08485) fliF 1674367..1675977 (+) 1611 WP_003154257.1 flagellar basal-body MS-ring/collar protein FliF -
  PF996_RS08490 (PF996_08490) fliG 1675990..1677006 (+) 1017 WP_003154256.1 flagellar motor switch protein FliG -
  PF996_RS08495 (PF996_08495) fliH 1676999..1677754 (+) 756 WP_063636636.1 flagellar assembly protein FliH -

Sequence

Protein


Download         Length: 259 a.a.        Molecular weight: 29055.26 Da        Isoelectric Point: 4.6560

>NTDB_id=775259 PF996_RS08465 WP_017417775.1 1672019..1672798(+) (codY) [Bacillus velezensis strain SRCM124633]
MALLQKTRIINSMLQAAAGKPVNFKEMAETLRDVIDSNIFVVSRRGKLLGYSINQQIENDRMKKMLEDRQFPEEYTRNLF
NVPETSSNLDINSEYTAFPVENRDLFQAGLTTIVPIIGGGERLGTLILSRLQNQFEDDDLILAEYGATVVGMEILREKAE
EIEEEARSKAVVQMAISSLSYSELEAIEHIFEELDGNEGLLVASKIADRVGITRSVIVNALRKLESAGVIESRSLGMKGT
YIKVLNNKFLIELENLKSH

Nucleotide


Download         Length: 780 bp        

>NTDB_id=775259 PF996_RS08465 WP_017417775.1 1672019..1672798(+) (codY) [Bacillus velezensis strain SRCM124633]
ATGGCTTTACTACAAAAAACACGAATTATTAACAGCATGCTGCAGGCTGCGGCAGGCAAACCCGTAAACTTTAAAGAAAT
GGCTGAAACGCTTCGTGACGTCATTGATTCTAATATTTTCGTCGTCAGCCGCAGAGGAAAGCTTTTGGGCTACTCTATTA
ATCAGCAGATTGAAAATGACCGCATGAAAAAAATGCTTGAAGACCGCCAGTTCCCGGAAGAGTACACGAGAAATCTGTTC
AATGTTCCGGAGACGTCTTCAAACCTTGATATCAACAGCGAATACACGGCGTTTCCTGTGGAAAACAGAGACCTGTTCCA
AGCGGGCTTAACAACGATCGTGCCGATCATCGGCGGAGGAGAGAGACTGGGCACGCTCATTCTGTCCCGTCTGCAGAATC
AATTTGAAGATGATGATCTAATTCTTGCTGAATACGGAGCAACCGTTGTAGGAATGGAGATTTTAAGAGAAAAAGCGGAA
GAAATCGAAGAAGAGGCGCGAAGCAAAGCAGTTGTTCAAATGGCGATCAGTTCTCTGTCTTACAGTGAACTTGAAGCGAT
TGAGCATATCTTTGAAGAGCTTGACGGAAACGAAGGCTTGCTTGTGGCAAGTAAGATTGCGGACCGTGTCGGCATTACGC
GTTCAGTCATCGTTAACGCGCTGAGAAAACTGGAAAGCGCAGGCGTCATTGAATCCAGATCACTGGGAATGAAGGGGACG
TACATTAAAGTTCTGAACAACAAATTCCTTATTGAATTGGAAAACCTTAAATCTCATTAA

Domains

Predicted by InterproScan.

CodY GAF-like domain (CodY)

(3-178)

CodY helix-turn-helix domain (HTH_CodY)

(198-255)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB A0A411A618

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  codY Bacillus subtilis subsp. subtilis str. 168

98.842

100

0.988
  codY Lactococcus lactis subsp. lactis strain DGCC12653

47.843

98.456

0.471