Detailed information    

insolico Bioinformatically predicted

Overview

Name   codY   Type   Regulator
Locus tag   PF977_RS13795 Genome accession   NZ_CP116012
Coordinates   2621182..2621961 (-) Length   259 a.a.
NCBI ID   WP_003220850.1    Uniprot ID   G4NSM6
Organism   Bacillus subtilis strain SRCM124333     
Function   repression of comK (predicted from homology)   
Competence regulation

Genomic Context

Location: 2616182..2626961
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  PF977_RS13765 (PF977_13765) fliH 2616200..2616952 (-) 753 WP_003244804.1 flagellar assembly protein FliH -
  PF977_RS13770 (PF977_13770) fliG 2616945..2617961 (-) 1017 WP_003231981.1 flagellar motor switch protein FliG -
  PF977_RS13775 (PF977_13775) fliF 2617974..2619584 (-) 1611 WP_051388163.1 flagellar basal-body MS-ring/collar protein FliF -
  PF977_RS13780 (PF977_13780) fliE 2619630..2619950 (-) 321 WP_003238544.1 flagellar hook-basal body complex protein FliE -
  PF977_RS13785 (PF977_13785) flgC 2619961..2620413 (-) 453 WP_003245521.1 flagellar basal body rod protein FlgC -
  PF977_RS13790 (PF977_13790) flgB 2620413..2620802 (-) 390 WP_003245656.1 flagellar basal body rod protein FlgB -
  PF977_RS13795 (PF977_13795) codY 2621182..2621961 (-) 780 WP_003220850.1 GTP-sensing pleiotropic transcriptional regulator CodY Regulator
  PF977_RS13800 (PF977_13800) hslU 2622001..2623404 (-) 1404 WP_014476801.1 HslU--HslV peptidase ATPase subunit -
  PF977_RS13805 (PF977_13805) clpQ 2623421..2623966 (-) 546 WP_003238555.1 ATP-dependent protease subunit ClpQ -
  PF977_RS13810 (PF977_13810) xerC 2623979..2624893 (-) 915 WP_003231988.1 tyrosine recombinase XerC -
  PF977_RS13815 (PF977_13815) trmFO 2624961..2626268 (-) 1308 WP_015715883.1 FADH(2)-oxidizing methylenetetrahydrofolate--tRNA-(uracil(54)-C(5))- methyltransferase TrmFO -

Sequence

Protein


Download         Length: 259 a.a.        Molecular weight: 29013.22 Da        Isoelectric Point: 4.6514

>NTDB_id=775117 PF977_RS13795 WP_003220850.1 2621182..2621961(-) (codY) [Bacillus subtilis strain SRCM124333]
MALLQKTRIINSMLQAAAGKPVNFKEMAETLRDVIDSNIFVVSRRGKLLGYSINQQIENDRMKKMLEDRQFPEEYTKNLF
NVPETSSNLDINSEYTAFPVENRDLFQAGLTTIVPIIGGGERLGTLILSRLQDQFNDDDLILAEYGATVVGMEILREKAE
EIEEEARSKAVVQMAISSLSYSELEAIEHIFEELDGNEGLLVASKIADRVGITRSVIVNALRKLESAGVIESRSLGMKGT
YIKVLNNKFLIELENLKSH

Nucleotide


Download         Length: 780 bp        

>NTDB_id=775117 PF977_RS13795 WP_003220850.1 2621182..2621961(-) (codY) [Bacillus subtilis strain SRCM124333]
ATGGCTTTATTACAAAAAACAAGAATTATTAACTCCATGCTGCAAGCTGCGGCAGGGAAACCGGTAAACTTCAAGGAAAT
GGCGGAGACGCTGCGGGATGTAATTGATTCCAATATTTTCGTTGTAAGCCGCAGAGGGAAACTCCTTGGGTATTCTATTA
ACCAGCAAATTGAAAATGATCGTATGAAAAAAATGCTTGAGGATCGTCAATTCCCTGAAGAATATACGAAAAATCTGTTT
AATGTCCCTGAAACATCTTCTAACTTGGATATTAATAGTGAATATACTGCTTTCCCTGTTGAGAACAGAGACCTGTTTCA
AGCTGGTTTAACAACAATTGTGCCGATCATCGGAGGCGGGGAAAGATTAGGAACACTTATTCTTTCGCGTTTACAAGATC
AATTCAATGACGATGACTTAATTCTAGCTGAATACGGCGCAACAGTTGTCGGAATGGAAATCCTAAGAGAAAAAGCAGAA
GAAATTGAAGAGGAAGCAAGAAGCAAAGCTGTCGTACAAATGGCTATCAGCTCGCTTTCTTACAGTGAGCTTGAAGCAAT
TGAGCACATTTTTGAGGAGCTTGACGGAAATGAAGGTCTTCTTGTTGCAAGTAAAATTGCTGACCGTGTCGGCATTACCC
GTTCTGTTATTGTGAACGCACTCAGAAAGCTGGAGAGCGCCGGTGTTATCGAGTCTAGATCATTAGGAATGAAAGGTACT
TATATCAAGGTACTAAACAACAAATTCCTAATTGAATTAGAAAATCTAAAATCTCATTAA

Domains

Predicted by InterproScan.

CodY helix-turn-helix domain (HTH_CodY)

(198-255)

CodY GAF-like domain (CodY)

(3-178)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB G4NSM6

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  codY Bacillus subtilis subsp. subtilis str. 168

100

100

1
  codY Lactococcus lactis subsp. lactis strain DGCC12653

47.451

98.456

0.467