Detailed information NTG0775046

Bioinformatically predicted

Overview

• Name: recD2
• Type: Machinery gene
• Locus tag: PF976_RS13325
• Genome accession: NZ_CP116011
• Coordinates: 2557946..2560324 (-)
• Length: 792 a.a.
• NCBI ID: WP_014470767.1
• Uniprot ID: -
• Organism: Bacillus amyloliquefaciens strain SRCM124317
• Function: homologous recombination (predicted from homology) Homologous recombination

Genomic Context

Location: 2552946..2565324

Locus tag	Gene name	Coordinates (strand)	Size (bp)	Protein ID	Product	Description
PF976_RS13290 (PF976_13290)	-	2554027..2554755 (+)	729	WP_014470762.1	amino acid ABC transporter ATP-binding protein	-
PF976_RS13295 (PF976_13295)	-	2554776..2555603 (+)	828	WP_014470763.1	transporter substrate-binding domain-containing protein	-
PF976_RS13300 (PF976_13300)	-	2555661..2556311 (+)	651	WP_014470764.1	amino acid ABC transporter permease	-
PF976_RS13305 (PF976_13305)	-	2556330..2556986 (+)	657	WP_014470765.1	amino acid ABC transporter permease	-
PF976_RS13310 (PF976_13310)	-	2557020..2557151 (-)	132	WP_003152741.1	YrzQ family protein	-
PF976_RS13315 (PF976_13315)	-	2557173..2557364 (-)	192	WP_003152738.1	hypothetical protein	-
PF976_RS13320 (PF976_13320)	-	2557377..2557835 (-)	459	WP_014470766.1	hypothetical protein	-
PF976_RS13325 (PF976_13325)	recD2	2557946..2560324 (-)	2379	WP_014470767.1	ATP-dependent RecD-like DNA helicase	Machinery gene
PF976_RS13330 (PF976_13330)	-	2560343..2560963 (-)	621	WP_088030693.1	tetratricopeptide repeat protein	-
PF976_RS13335 (PF976_13335)	mnmA	2561051..2562166 (-)	1116	WP_013353020.1	tRNA 2-thiouridine(34) synthase MnmA	-
PF976_RS13340 (PF976_13340)	-	2562203..2563342 (-)	1140	WP_013353021.1	cysteine desulfurase family protein	-
PF976_RS13345 (PF976_13345)	cymR	2563361..2563777 (-)	417	WP_013353022.1	cysteine metabolism transcriptional regulator CymR	-
PF976_RS13350 (PF976_13350)	-	2563972..2565240 (+)	1269	WP_013353023.1	replication-associated recombination protein A	-

Sequence

Protein

• Length: 792 a.a.
• Molecular weight: 88286.04 Da
• Isoelectric Point: 5.0255

>NTDB_id=775046 PF976_RS13325 WP_014470767.1 2557946..2560324(-) (recD2) [Bacillus amyloliquefaciens strain SRCM124317]
MDQLKIEEQPYVKGVIHTVIYHNDTNLYTVLKVKVAETSEAIEDKVVSVTGYFPLLQEDETYTFYGKTATHPKFGLQFQA
EHFKKEIPTTKEGIIHYLSSDLFEGIGKKTAEEIVKKLGDGALNKILADASVLYDVPKMSKKKADKLAGELQRHQGLEQI
MISLNQYGFGPQLSMKIYQAYETETLEKIQENPYQLVKDVEGIGFVKADELGGKMGLSGNHPERIKAAILYTIESTCLSE
GHTYIDTKQLIINTQTLLNQSADGGRVTEMDAADGIIALGESKDIVIEGDRCYFPSLFYAEQNVAKRVLDIAAQTEYADQ
FPESEFLLALGELEERMKVQYAPSQKDAIQKALSSPMLLLTGGPGTGKTTVIKGIVELYSELHGVSLDPGDYKKDEAFPV
LLAAPTGRAAKRMSESTGLPAVTIHRLLGWNGAEGFTYNEDQPIEGKLIIIDEASMLDIWLASHLFKALPKHIQLIVVGD
EDQLPSVGPGQVLRDLLASEVLPTVRLTDIYRQAEGSSIVELAHDMKKGLLPKGLTAPTKDRSFIRCNSAQIKEVVDQVV
SNALKKGYTSRDIQVLAPMYRGKAGINELNILLQDIMNPPKEKRRELKFGDVVYRTGDKILQLVNQPENNVFNGDIGEIV
SIFYAKENTEKEDMVVVSFDGNEITFTKKDFSQFTHAYCCSIHKSQGSEFPIVVLPVVKGYYRMLRRNLLYTAITRAKKF
LILCGEEEALEWGVKNNDATVRQTSLKNRLTEQTEEMDAELAALQKELPFSVYDANIGMEGITPFDFMEEKA

Nucleotide

• Length: 2379 bp

>NTDB_id=775046 PF976_RS13325 WP_014470767.1 2557946..2560324(-) (recD2) [Bacillus amyloliquefaciens strain SRCM124317]
GTGGATCAGCTGAAAATCGAGGAACAACCGTATGTAAAAGGCGTTATTCATACGGTCATTTACCACAATGACACCAACCT
GTATACAGTGCTGAAGGTCAAGGTTGCAGAAACGTCTGAGGCGATCGAAGACAAGGTCGTATCCGTAACGGGCTACTTCC
CTCTGCTGCAAGAAGATGAGACTTACACATTTTACGGAAAAACCGCCACACATCCCAAGTTCGGCCTGCAATTCCAGGCT
GAACACTTTAAAAAAGAAATTCCGACCACCAAAGAAGGGATCATTCACTATTTATCAAGTGATCTGTTTGAAGGAATCGG
AAAAAAAACGGCGGAAGAAATCGTCAAAAAGCTTGGAGACGGCGCGCTGAATAAAATTCTGGCTGATGCGTCGGTGCTTT
ACGATGTGCCGAAAATGTCCAAAAAGAAAGCGGATAAGCTTGCCGGAGAGCTGCAGCGGCATCAGGGGCTGGAGCAGATT
ATGATTTCTCTTAACCAATACGGTTTCGGACCTCAGCTTTCCATGAAAATTTATCAAGCTTACGAAACGGAAACCCTTGA
GAAAATTCAGGAGAATCCTTATCAGCTTGTAAAGGACGTGGAAGGCATCGGCTTTGTAAAAGCCGACGAGCTGGGCGGAA
AAATGGGTCTGTCAGGGAACCATCCCGAGCGGATCAAAGCGGCGATCTTATATACGATTGAATCGACCTGCCTTTCAGAA
GGTCATACTTACATAGACACAAAGCAGCTGATTATCAATACGCAAACGCTACTGAATCAGTCAGCTGACGGAGGCCGCGT
CACGGAAATGGATGCGGCTGACGGCATCATCGCCCTCGGAGAGAGTAAGGACATCGTCATAGAAGGAGACCGCTGCTATT
TTCCGTCTTTGTTTTACGCGGAACAAAATGTCGCAAAACGCGTGCTCGACATTGCGGCTCAGACGGAGTATGCCGATCAA
TTTCCTGAATCGGAATTTCTGCTTGCGCTCGGCGAACTGGAAGAACGGATGAAAGTTCAATACGCTCCGAGCCAAAAGGA
TGCCATTCAAAAAGCGCTGTCGTCGCCGATGCTTTTACTGACCGGAGGACCGGGTACGGGAAAAACGACCGTTATCAAAG
GAATCGTGGAATTATACAGTGAACTCCACGGCGTATCGCTTGATCCCGGTGATTATAAAAAAGACGAGGCGTTTCCGGTG
CTGCTTGCCGCGCCGACCGGAAGAGCCGCAAAACGGATGAGCGAATCTACGGGTCTGCCTGCTGTTACGATTCACAGGCT
GCTCGGCTGGAATGGCGCTGAAGGCTTTACCTACAATGAAGATCAGCCGATTGAAGGGAAACTGATCATTATAGACGAAG
CGAGTATGCTCGATATTTGGCTCGCCAGCCATTTGTTTAAGGCGCTCCCTAAGCACATTCAGCTCATCGTCGTCGGTGAT
GAAGATCAGCTTCCTTCCGTGGGGCCGGGGCAGGTGCTGAGAGACCTTTTGGCTTCTGAGGTGCTGCCGACAGTGCGCCT
GACAGATATTTACCGTCAGGCGGAAGGGTCATCCATCGTCGAACTTGCTCATGATATGAAAAAAGGATTGCTTCCAAAAG
GACTGACCGCGCCGACAAAAGACCGCTCATTTATCCGCTGTAATTCTGCACAGATTAAAGAAGTCGTCGATCAAGTCGTT
TCAAACGCGTTAAAGAAGGGATATACCTCCAGAGATATTCAAGTGCTTGCGCCGATGTACAGGGGAAAAGCGGGAATTAA
CGAGCTGAATATACTTCTTCAAGACATCATGAATCCGCCGAAAGAAAAAAGGCGGGAGCTGAAATTCGGAGATGTCGTCT
ACAGGACGGGCGATAAAATATTGCAGCTTGTCAACCAGCCGGAAAACAATGTGTTTAACGGTGATATCGGCGAAATCGTG
TCCATTTTTTATGCCAAAGAAAATACGGAAAAAGAAGACATGGTCGTCGTCTCGTTTGACGGTAATGAAATCACCTTTAC
GAAAAAGGATTTCAGCCAGTTTACCCATGCTTACTGCTGTTCCATCCACAAGTCTCAGGGAAGTGAATTTCCGATTGTCG
TCCTGCCTGTTGTCAAAGGCTACTATCGAATGCTTAGGAGAAATCTCCTTTATACCGCCATTACAAGGGCCAAGAAATTT
CTGATCCTTTGCGGAGAAGAAGAAGCGCTTGAATGGGGCGTCAAAAACAATGATGCCACCGTCAGACAGACGTCGCTTAA
AAACAGGCTCACAGAGCAGACTGAAGAGATGGATGCAGAACTGGCCGCTCTGCAAAAAGAACTGCCGTTCAGTGTATATG
ATGCCAACATCGGAATGGAAGGCATTACGCCGTTTGACTTTATGGAAGAAAAAGCGTAA

Domains

Predicted by InterproScan.

• Helix-hairpin-helix containing domain (HHH_RecD2) (154-244)

• ATP-dependent RecD-like DNA helicase SH3 domain (SH3_13) (589-659)

• AAA domain (AAA_30) (341-548)

• UvrD-like helicase C-terminal domain (UvrD_C_2) (676-724)

Similar proteins

Only experimentally validated proteins are listed.

Protein	Organism	Identities (%)	Coverage (%)	Ha-value
recD2	Bacillus subtilis subsp. subtilis str. 168	88.748	99.874	0.886