Detailed information    

insolico Bioinformatically predicted

Overview

Name   codY   Type   Regulator
Locus tag   PF976_RS08130 Genome accession   NZ_CP116011
Coordinates   1541913..1542692 (+) Length   259 a.a.
NCBI ID   WP_013352252.1    Uniprot ID   -
Organism   Bacillus amyloliquefaciens strain SRCM124317     
Function   repression of comK (predicted from homology)   
Competence regulation

Genomic Context

Location: 1536913..1547692
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  PF976_RS08110 (PF976_08110) trmFO 1537600..1538907 (+) 1308 WP_013352248.1 FADH(2)-oxidizing methylenetetrahydrofolate--tRNA-(uracil(54)-C(5))- methyltransferase TrmFO -
  PF976_RS08115 (PF976_08115) xerC 1538977..1539894 (+) 918 WP_013352249.1 tyrosine recombinase XerC -
  PF976_RS08120 (PF976_08120) hslV 1539910..1540455 (+) 546 WP_013352250.1 ATP-dependent protease subunit HslV -
  PF976_RS08125 (PF976_08125) hslU 1540472..1541875 (+) 1404 WP_014470401.1 HslU--HslV peptidase ATPase subunit -
  PF976_RS08130 (PF976_08130) codY 1541913..1542692 (+) 780 WP_013352252.1 GTP-sensing pleiotropic transcriptional regulator CodY Regulator
  PF976_RS08135 (PF976_08135) flgB 1543046..1543435 (+) 390 WP_013352253.1 flagellar basal body rod protein FlgB -
  PF976_RS08140 (PF976_08140) flgC 1543435..1543887 (+) 453 WP_013352254.1 flagellar basal body rod protein FlgC -
  PF976_RS08145 (PF976_08145) fliE 1543898..1544218 (+) 321 WP_007409777.1 flagellar hook-basal body complex protein FliE -
  PF976_RS08150 (PF976_08150) fliF 1544261..1545871 (+) 1611 WP_013352255.1 flagellar basal-body MS-ring/collar protein FliF -
  PF976_RS08155 (PF976_08155) fliG 1545884..1546900 (+) 1017 WP_013352256.1 flagellar motor switch protein FliG -
  PF976_RS08160 (PF976_08160) fliH 1546893..1547648 (+) 756 WP_013352257.1 flagellar assembly protein FliH -

Sequence

Protein


Download         Length: 259 a.a.        Molecular weight: 29028.23 Da        Isoelectric Point: 4.6017

>NTDB_id=775028 PF976_RS08130 WP_013352252.1 1541913..1542692(+) (codY) [Bacillus amyloliquefaciens strain SRCM124317]
MALLQKTRIINSMLQAAAGKPVNFKEMAETLRDVIDSNIFVVSRRGKLLGYSINQQIENDRMKKMLEDRQFPEEYTKNLF
NVPETSSNLDINSEYTAFPVENRDLFQAGLTTIVPIIGGGERLGTLILSRLQDQFEDDDLILAEYGATVVGMEILREKAE
EIEEEARSKAVVQMAISSLSYSELEAIEHIFEELDGNEGLLVASKIADRVGITRSVIVNALRKLESAGVIESRSLGMKGT
YIKVLNNKFLIELENLKSH

Nucleotide


Download         Length: 780 bp        

>NTDB_id=775028 PF976_RS08130 WP_013352252.1 1541913..1542692(+) (codY) [Bacillus amyloliquefaciens strain SRCM124317]
ATGGCTTTACTACAAAAAACACGAATTATTAACAGCATGTTGCAGGCTGCGGCAGGCAAACCCGTAAACTTTAAAGAAAT
GGCTGAAACGCTTCGTGACGTCATTGATTCTAATATTTTCGTCGTCAGCCGCAGAGGAAAGCTTTTAGGCTACTCTATTA
ATCAGCAGATCGAAAATGACCGCATGAAAAAAATGCTGGAAGACCGCCAGTTCCCGGAAGAGTACACGAAAAATCTGTTC
AACGTTCCGGAGACGTCTTCAAACCTTGATATCAACAGTGAATACACGGCATTTCCTGTTGAAAACAGAGACCTGTTCCA
GGCAGGCTTAACGACGATTGTCCCGATTATCGGCGGAGGCGAGCGTCTGGGCACATTGATTCTGTCCCGTCTGCAGGATC
AATTTGAAGATGATGATCTCATTCTTGCTGAATACGGAGCAACCGTTGTAGGAATGGAGATTTTAAGAGAAAAAGCGGAA
GAAATCGAAGAAGAAGCACGAAGCAAAGCAGTCGTTCAAATGGCGATCAGTTCTCTGTCTTACAGTGAACTTGAAGCGAT
TGAGCATATCTTTGAAGAACTTGACGGAAACGAAGGCTTGCTTGTGGCAAGTAAGATTGCGGACCGTGTGGGCATTACGC
GTTCAGTAATCGTTAACGCGCTGAGAAAGCTGGAAAGCGCCGGCGTCATTGAATCCAGATCACTGGGAATGAAGGGAACT
TACATTAAAGTTCTGAACAACAAATTCCTTATTGAATTGGAAAATCTTAAATCACATTAA

Domains

Predicted by InterproScan.

CodY GAF-like domain (CodY)

(3-178)

CodY helix-turn-helix domain (HTH_CodY)

(198-255)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  codY Bacillus subtilis subsp. subtilis str. 168

99.614

100

0.996
  codY Lactococcus lactis subsp. lactis strain DGCC12653

47.451

98.456

0.467