Detailed information    

insolico Bioinformatically predicted

Overview

Name   codY   Type   Regulator
Locus tag   PF975_RS11645 Genome accession   NZ_CP116010
Coordinates   2402245..2403024 (-) Length   259 a.a.
NCBI ID   WP_003154263.1    Uniprot ID   I2C545
Organism   Bacillus velezensis strain SRCM123815     
Function   repression of comK (predicted from homology)   
Competence regulation

Genomic Context

Location: 2397245..2408024
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  PF975_RS11615 (PF975_11615) fliH 2397289..2398044 (-) 756 WP_014417769.1 flagellar assembly protein FliH -
  PF975_RS11620 (PF975_11620) fliG 2398037..2399053 (-) 1017 WP_003154256.1 flagellar motor switch protein FliG -
  PF975_RS11625 (PF975_11625) fliF 2399066..2400676 (-) 1611 WP_014417768.1 flagellar basal-body MS-ring/collar protein FliF -
  PF975_RS11630 (PF975_11630) fliE 2400719..2401039 (-) 321 WP_007409777.1 flagellar hook-basal body complex protein FliE -
  PF975_RS11635 (PF975_11635) flgC 2401050..2401502 (-) 453 WP_003154259.1 flagellar basal body rod protein FlgC -
  PF975_RS11640 (PF975_11640) flgB 2401502..2401891 (-) 390 WP_003154260.1 flagellar basal body rod protein FlgB -
  PF975_RS11645 (PF975_11645) codY 2402245..2403024 (-) 780 WP_003154263.1 GTP-sensing pleiotropic transcriptional regulator CodY Regulator
  PF975_RS11650 (PF975_11650) hslU 2403062..2404465 (-) 1404 WP_007611413.1 HslU--HslV peptidase ATPase subunit -
  PF975_RS11655 (PF975_11655) hslV 2404482..2405027 (-) 546 WP_022553348.1 ATP-dependent protease subunit HslV -
  PF975_RS11660 (PF975_11660) xerC 2405043..2405960 (-) 918 WP_007409774.1 tyrosine recombinase XerC -
  PF975_RS11665 (PF975_11665) trmFO 2406030..2407337 (-) 1308 WP_012117550.1 FADH(2)-oxidizing methylenetetrahydrofolate--tRNA-(uracil(54)-C(5))- methyltransferase TrmFO -

Sequence

Protein


Download         Length: 259 a.a.        Molecular weight: 29056.24 Da        Isoelectric Point: 4.6017

>NTDB_id=774967 PF975_RS11645 WP_003154263.1 2402245..2403024(-) (codY) [Bacillus velezensis strain SRCM123815]
MALLQKTRIINSMLQAAAGKPVNFKEMAETLRDVIDSNIFVVSRRGKLLGYSINQQIENDRMKKMLEDRQFPEEYTRNLF
NVPETSSNLDINSEYTAFPVENRDLFQAGLTTIVPIIGGGERLGTLILSRLQDQFEDDDLILAEYGATVVGMEILREKAE
EIEEEARSKAVVQMAISSLSYSELEAIEHIFEELDGNEGLLVASKIADRVGITRSVIVNALRKLESAGVIESRSLGMKGT
YIKVLNNKFLIELENLKSH

Nucleotide


Download         Length: 780 bp        

>NTDB_id=774967 PF975_RS11645 WP_003154263.1 2402245..2403024(-) (codY) [Bacillus velezensis strain SRCM123815]
ATGGCTTTACTACAAAAAACACGAATTATTAACAGCATGCTGCAGGCTGCGGCAGGCAAACCCGTAAACTTTAAAGAAAT
GGCTGAAACGCTTCGTGACGTCATTGATTCTAATATTTTCGTCGTCAGCCGCAGAGGAAAGCTTTTGGGCTACTCTATTA
ATCAGCAGATTGAAAATGACCGCATGAAAAAAATGCTTGAAGACCGCCAGTTCCCGGAAGAGTACACGAGAAATCTGTTC
AATGTTCCGGAGACGTCTTCAAACCTTGATATCAACAGCGAATACACGGCGTTTCCTGTGGAAAACAGAGACCTGTTCCA
AGCGGGCTTAACAACGATCGTGCCGATCATCGGCGGAGGAGAGAGACTGGGCACGCTCATTCTGTCCCGTCTGCAGGATC
AATTTGAAGATGATGATCTCATTCTTGCTGAATACGGAGCAACCGTTGTAGGAATGGAGATTTTAAGAGAAAAAGCGGAA
GAAATCGAAGAAGAGGCGCGAAGCAAAGCGGTTGTTCAAATGGCGATCAGTTCTCTGTCTTACAGTGAACTTGAAGCGAT
TGAGCATATCTTTGAAGAGCTTGACGGAAACGAAGGCTTGCTTGTGGCAAGTAAGATTGCGGACCGTGTCGGCATCACGC
GTTCAGTCATCGTTAACGCGCTGAGAAAGCTGGAAAGCGCAGGCGTCATTGAATCCAGATCACTGGGAATGAAGGGGACG
TACATTAAAGTTCTGAACAACAAATTCCTTATTGAATTGGAAAACCTTAAATCTCATTAA

Domains

Predicted by InterproScan.

CodY GAF-like domain (CodY)

(3-178)

CodY helix-turn-helix domain (HTH_CodY)

(198-255)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB I2C545

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  codY Bacillus subtilis subsp. subtilis str. 168

99.228

100

0.992
  codY Lactococcus lactis subsp. lactis strain DGCC12653

47.843

98.456

0.471