Detailed information    

insolico Bioinformatically predicted

Overview

Name   comF   Type   Machinery gene
Locus tag   PE065_RS05625 Genome accession   NZ_CP116008
Coordinates   1236615..1237085 (+) Length   156 a.a.
NCBI ID   WP_333781508.1    Uniprot ID   -
Organism   Chryseobacterium gambrini strain DMF-6     
Function   ssDNA transport into the cell (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 1231615..1242085
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  PE065_RS05610 (PE065_05610) aceA 1231650..1232930 (-) 1281 WP_256037994.1 isocitrate lyase -
  PE065_RS05615 (PE065_05615) aceB 1233079..1234653 (-) 1575 WP_271248180.1 malate synthase A -
  PE065_RS05620 (PE065_05620) - 1234779..1236254 (+) 1476 WP_256037996.1 helix-turn-helix domain-containing protein -
  PE065_RS22820 - 1236435..1236491 (+) 57 Protein_1117 hypothetical protein -
  PE065_RS05625 (PE065_05625) comF 1236615..1237085 (+) 471 WP_333781508.1 ComF family protein Machinery gene
  PE065_RS05630 (PE065_05630) - 1237126..1238325 (-) 1200 WP_271248182.1 cytochrome-c peroxidase -
  PE065_RS05635 (PE065_05635) - 1238414..1239781 (-) 1368 WP_271248183.1 YHYH protein -
  PE065_RS05640 (PE065_05640) - 1239826..1240896 (-) 1071 WP_271248184.1 cytochrome-c peroxidase -
  PE065_RS05645 (PE065_05645) - 1240918..1241595 (-) 678 WP_271248185.1 MbnP family protein -
  PE065_RS05650 (PE065_05650) - 1241592..1242041 (-) 450 WP_271248186.1 Spy/CpxP family protein refolding chaperone -

Sequence

Protein


Download         Length: 156 a.a.        Molecular weight: 18327.10 Da        Isoelectric Point: 9.8205

>NTDB_id=774891 PE065_RS05625 WP_333781508.1 1236615..1237085(+) (comF) [Chryseobacterium gambrini strain DMF-6]
MQFEKENVSRKLIHELKYRNREKIGKILAEWTTERLDFQNQKPDLLVTVPLHPRKLKERGYNQLHWFAETLSEFYAIPFD
HDVMKRNHYSKAQALKDKQNRLKTENVFSMTKNISGKHILLIDDVFTTGNTLASIAWEILKSGDNKVSVLVMAIDE

Nucleotide


Download         Length: 471 bp        

>NTDB_id=774891 PE065_RS05625 WP_333781508.1 1236615..1237085(+) (comF) [Chryseobacterium gambrini strain DMF-6]
ATGCAGTTTGAAAAAGAAAATGTGAGCCGAAAATTAATTCATGAACTGAAGTACCGGAATCGGGAGAAAATAGGGAAAAT
TTTGGCTGAATGGACCACGGAAAGACTGGATTTTCAAAATCAGAAGCCAGATCTTTTGGTGACGGTCCCGCTTCATCCGA
GAAAATTAAAAGAAAGAGGATATAATCAACTGCATTGGTTTGCCGAAACGCTTTCAGAATTTTATGCTATTCCTTTTGAT
CATGATGTGATGAAAAGAAATCATTATTCCAAAGCTCAGGCTTTGAAGGATAAACAGAACCGGCTGAAAACGGAAAATGT
ATTTTCAATGACTAAAAATATTTCAGGTAAGCATATTTTGTTAATTGATGATGTTTTTACAACGGGAAATACGCTGGCTT
CTATTGCATGGGAGATCCTGAAATCGGGAGATAATAAAGTGAGTGTTTTGGTTATGGCGATTGATGAATAA

Domains

Predicted by InterproScan.

Phosphoribosyl transferase domain (Pribosyltran)

(22-142)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comF Riemerella anatipestifer ATCC 11845 = DSM 15868

55.128

100

0.551