Detailed information    

insolico Bioinformatically predicted

Overview

Name   recJ   Type   Machinery gene
Locus tag   PGN40_RS17620 Genome accession   NZ_CP115914
Coordinates   3525168..3527525 (-) Length   785 a.a.
NCBI ID   WP_040056839.1    Uniprot ID   -
Organism   Priestia filamentosa strain AZC66     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 3520168..3532525
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  PGN40_RS17595 (PGN40_17595) - 3520619..3520786 (-) 168 WP_019391367.1 hypothetical protein -
  PGN40_RS17600 (PGN40_17600) - 3520902..3521768 (+) 867 WP_120045993.1 N-acetylmuramoyl-L-alanine amidase -
  PGN40_RS17605 (PGN40_17605) dtd 3521790..3522236 (-) 447 WP_019391365.1 D-aminoacyl-tRNA deacylase -
  PGN40_RS17610 (PGN40_17610) - 3522252..3524459 (-) 2208 WP_019391364.1 RelA/SpoT family protein -
  PGN40_RS17615 (PGN40_17615) - 3524647..3525168 (-) 522 WP_019391363.1 adenine phosphoribosyltransferase -
  PGN40_RS17620 (PGN40_17620) recJ 3525168..3527525 (-) 2358 WP_040056839.1 single-stranded-DNA-specific exonuclease RecJ Machinery gene
  PGN40_RS17625 (PGN40_17625) secDF 3527637..3529874 (-) 2238 WP_019391361.1 protein translocase subunit SecDF -
  PGN40_RS17630 (PGN40_17630) - 3530022..3530312 (-) 291 WP_019391360.1 post-transcriptional regulator -
  PGN40_RS17635 (PGN40_17635) spoVB 3530446..3532005 (+) 1560 WP_272541716.1 stage V sporulation protein B -

Sequence

Protein


Download         Length: 785 a.a.        Molecular weight: 88327.94 Da        Isoelectric Point: 4.7899

>NTDB_id=774389 PGN40_RS17620 WP_040056839.1 3525168..3527525(-) (recJ) [Priestia filamentosa strain AZC66]
MLHSKKRWRVQETDAAKAEELASQLSVSPLVASLLMNRDITTVDEARHFLYLTDENMHDPYLLKDMDIVVERIQRAIRDE
EKIMIYGDYDADGVSSTSVMLTALRTLGAHVDFYIPNRFTEGYGPNEGAFRHIGEQGYTLVITVDTGISGVNEADVAEEC
GFDLIITDHHEPGPELPKAFAIIHPKLSERYPFKELAGVGVALKIGQALLGEISPALVELAAIGTVADLVPLQDENRYIV
QKGLHYLRHTNRPGMKALLNVCGVNQKEITEETIGFAIGPRINAIGRLEQADPAVHLLMTTDQEEAESLAEEIDQCNQER
RNIVKEITDQAIEMVKTQFPPEENAVLVLAKEGWNPGVIGIVASRLVNEFYRPTIVLGIDEEGKIAKGSARSIEGFDLFA
NLSKCRDILPHFGGHPMAAGMTLALENVSLLREKMNKFGHELLSEEDFIPAVNIDVKASLDEITTDSIEELNKLAPFGVN
NPKPKVLIKDVPISSMRKIGADKTHLKVVVGDADCSLDGVGFGLGYLHDRISPLAHVSLVGELTINEWNNRRKPQIMLED
ALVEEWQLFDVRGVRKVSTFLADYITSDMLLVAFNEKTVQKEEFASYIDQVRLINSEKSTNELQGYEGDIVLLDVPPSLE
TLKTLMSGCKPARVYMLFLTEEDHFLNTVPTRDHFKWYYGFLLKKGPFDLKRYKQDLALHKGWTKETIDFMSQVFFELEF
ATIENGVISLVQHTPKRDLIESVTYKTKQEQLQVEKELIYRSYGELKELFEHFRKSSVINEEEIS

Nucleotide


Download         Length: 2358 bp        

>NTDB_id=774389 PGN40_RS17620 WP_040056839.1 3525168..3527525(-) (recJ) [Priestia filamentosa strain AZC66]
ATGTTACATTCAAAAAAGCGATGGAGAGTACAGGAAACAGACGCTGCAAAGGCAGAGGAGTTAGCAAGTCAGCTCTCTGT
TTCACCACTTGTTGCCTCTCTTTTGATGAATAGAGATATTACAACAGTAGATGAAGCAAGACACTTTTTATATTTAACAG
ATGAAAATATGCATGATCCATATCTTTTAAAAGATATGGACATTGTTGTTGAACGCATTCAGCGCGCTATTCGGGATGAA
GAGAAGATTATGATTTATGGAGATTACGATGCGGACGGAGTAAGCAGTACCTCTGTTATGTTAACAGCGCTTAGAACGCT
TGGAGCTCACGTTGATTTTTATATTCCAAATCGTTTTACAGAAGGATATGGTCCAAATGAAGGAGCTTTCCGTCATATTG
GTGAGCAAGGATATACGCTCGTTATCACGGTTGATACAGGAATCTCAGGTGTAAACGAAGCTGATGTTGCCGAAGAGTGC
GGCTTTGATCTTATTATTACAGATCATCATGAACCAGGCCCAGAGCTTCCAAAAGCTTTTGCTATCATTCACCCAAAACT
TTCTGAACGGTATCCTTTTAAAGAGCTAGCAGGAGTAGGCGTTGCCTTGAAAATTGGTCAAGCTCTTTTAGGTGAAATAA
GCCCTGCCCTTGTAGAACTTGCAGCAATTGGAACTGTAGCAGATTTAGTTCCTTTGCAAGATGAAAATCGCTACATCGTT
CAAAAGGGACTTCACTATCTAAGGCATACAAACCGCCCCGGAATGAAAGCTCTTTTGAACGTTTGTGGGGTGAATCAGAA
GGAAATTACAGAAGAAACGATTGGATTTGCCATTGGTCCTCGTATTAATGCTATTGGACGTCTAGAGCAAGCAGATCCAG
CTGTGCATCTTTTAATGACGACAGATCAAGAAGAAGCAGAAAGCCTCGCAGAAGAAATTGATCAATGCAATCAAGAACGG
AGAAATATTGTAAAAGAGATTACAGATCAAGCGATTGAAATGGTGAAAACACAGTTTCCTCCAGAAGAGAATGCAGTTCT
TGTACTTGCAAAAGAAGGATGGAACCCTGGCGTTATTGGTATTGTTGCTTCAAGGCTTGTAAATGAGTTTTATCGCCCAA
CAATTGTGCTTGGTATAGATGAAGAGGGGAAAATTGCTAAAGGCTCTGCACGAAGCATCGAAGGATTTGATCTTTTTGCT
AACTTATCAAAGTGCCGTGATATTTTACCGCATTTTGGAGGACATCCGATGGCAGCTGGAATGACCTTAGCGCTAGAGAA
TGTCTCCCTTTTACGCGAAAAAATGAACAAATTCGGTCACGAGCTTCTCAGTGAAGAAGACTTTATTCCAGCAGTAAATA
TTGATGTGAAGGCTTCCCTTGACGAAATTACAACAGATTCTATTGAGGAATTAAATAAGCTTGCCCCCTTTGGTGTTAAC
AACCCCAAACCAAAAGTTCTTATTAAGGATGTTCCGATTTCTTCAATGCGCAAAATTGGAGCGGATAAAACTCATCTGAA
AGTTGTTGTAGGAGATGCAGATTGCTCGCTTGACGGAGTTGGATTTGGACTTGGCTATCTTCATGACAGAATATCGCCGC
TTGCTCATGTTTCTCTAGTAGGAGAGCTTACCATCAACGAATGGAACAATCGTCGCAAACCACAAATCATGCTTGAAGAT
GCTTTAGTGGAGGAATGGCAGCTTTTTGACGTAAGAGGAGTTCGGAAAGTGTCAACGTTTTTAGCTGACTATATTACAAG
TGATATGCTTCTTGTTGCATTTAACGAAAAGACGGTTCAAAAAGAAGAGTTTGCTTCATATATTGATCAAGTGAGACTTA
TAAACTCAGAAAAGTCTACCAACGAGCTACAAGGTTATGAAGGAGATATTGTTTTATTGGATGTTCCTCCTTCATTAGAG
ACTTTAAAAACATTAATGAGCGGATGTAAACCAGCTCGAGTGTATATGCTATTTTTAACAGAGGAAGATCATTTCTTAAA
TACAGTCCCAACCCGAGACCATTTTAAATGGTATTATGGCTTCCTTTTAAAAAAAGGACCGTTTGATCTTAAACGATATA
AACAAGATCTTGCCCTCCATAAAGGGTGGACAAAGGAAACGATTGACTTTATGTCACAGGTGTTTTTTGAGCTGGAATTT
GCTACAATAGAAAATGGTGTGATTTCTTTAGTGCAACATACACCAAAACGTGATTTAATAGAGTCTGTCACTTATAAGAC
AAAACAAGAACAGCTACAAGTGGAAAAAGAGTTAATTTACCGTTCCTACGGTGAATTGAAGGAGCTTTTTGAGCATTTTA
GAAAAAGCTCTGTGATCAATGAGGAGGAAATAAGCTAA

Domains

Predicted by InterproScan.

Single-strand DNA-specific exonuclease, C terminal domain (ssDNA-exonuc_C)

(567-770)

DHHA1 domain (DHHA1)

(314-437)

RecJ OB domain (RecJ_OB)

(454-560)

DHH family (DHH)

(82-225)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  recJ Bacillus subtilis subsp. subtilis str. 168

54.897

98.854

0.543