Detailed information    

insolico Bioinformatically predicted

Overview

Name   comF   Type   Machinery gene
Locus tag   QUC27_RS24530 Genome accession   NZ_CP128507
Coordinates   5267657..5268082 (+) Length   141 a.a.
NCBI ID   WP_003094721.1    Uniprot ID   G3XD43
Organism   Pseudomonas aeruginosa strain WS27-3     
Function   assembly of type IV pilus (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 5262657..5273082
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  QUC27_RS24515 (QUC27_24515) pilX 5263227..5263814 (+) 588 WP_015648054.1 type 4a pilus minor pilin PilX -
  QUC27_RS24520 (QUC27_24520) pilY1 5263826..5267311 (+) 3486 WP_033940136.1 type 4a pilus biogenesis protein PilY1 -
  QUC27_RS24525 (QUC27_24525) pilY2 5267313..5267660 (+) 348 WP_003102609.1 type 4a fimbrial biogenesis protein PilY2 -
  QUC27_RS24530 (QUC27_24530) comF 5267657..5268082 (+) 426 WP_003094721.1 type 4a pilus minor pilin PilE Machinery gene
  QUC27_RS24535 (QUC27_24535) ispH 5268129..5269073 (-) 945 WP_003094724.1 4-hydroxy-3-methylbut-2-enyl diphosphate reductase -
  QUC27_RS24540 (QUC27_24540) fkpB 5269159..5269599 (-) 441 WP_003094726.1 FKBP-type peptidyl-prolyl cis-trans isomerase -
  QUC27_RS24545 (QUC27_24545) lspA 5269592..5270101 (-) 510 WP_003094728.1 signal peptidase II -
  QUC27_RS24550 (QUC27_24550) ileS 5270094..5272925 (-) 2832 WP_003094730.1 isoleucine--tRNA ligase -

Sequence

Protein


Download         Length: 141 a.a.        Molecular weight: 15279.30 Da        Isoelectric Point: 10.0198

>NTDB_id=774388 QUC27_RS24530 WP_003094721.1 5267657..5268082(+) (comF) [Pseudomonas aeruginosa strain WS27-3]
MRTRQKGFTLLEMVVVVAVIGILLGIAIPSYQNYVIRSNRTEGQALLSDAAARQERYYSQNPGVGYTKDVAKLGMSSANS
PNNLYNLTIATPTSTTYTLTATPINSQTRDKTCGKLTLNQLGERGAAGKTGNNSTVNDCWR

Nucleotide


Download         Length: 426 bp        

>NTDB_id=774388 QUC27_RS24530 WP_003094721.1 5267657..5268082(+) (comF) [Pseudomonas aeruginosa strain WS27-3]
ATGAGGACAAGACAGAAGGGCTTCACGTTGCTGGAAATGGTGGTGGTAGTGGCGGTGATCGGCATCCTCCTCGGCATCGC
CATTCCCAGTTACCAGAACTACGTGATCCGCTCCAACCGCACCGAGGGGCAGGCGCTGCTCTCGGACGCGGCCGCGCGCC
AGGAACGCTACTACTCGCAGAACCCCGGGGTCGGCTACACCAAGGACGTGGCCAAGCTGGGCATGAGTTCGGCCAACTCG
CCGAACAACCTGTACAACCTCACCATAGCGACGCCCACCAGCACCACCTATACCCTGACCGCCACGCCGATCAACTCGCA
GACCCGCGACAAGACCTGCGGCAAGCTGACCCTCAATCAGCTCGGCGAACGCGGCGCAGCCGGCAAGACCGGCAACAACA
GCACCGTCAACGACTGCTGGCGCTGA

Domains

Predicted by InterProScan.

Type IV minor pilin ComP, DNA uptake sequence receptor (ComP_DUS)

(29-117)

Prokaryotic N-terminal methylation motif (N_methyl)

(3-27)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  PDB 4NOA

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comF Acinetobacter baylyi ADP1

42.188

90.78

0.383