Detailed information    

insolico Bioinformatically predicted

Overview

Name   recD2   Type   Machinery gene
Locus tag   PGN40_RS17540 Genome accession   NZ_CP115914
Coordinates   3507782..3510145 (-) Length   787 a.a.
NCBI ID   WP_040056834.1    Uniprot ID   A0A1X7CVH7
Organism   Priestia filamentosa strain AZC66     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 3502782..3515145
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  PGN40_RS17520 (PGN40_17520) - 3505201..3506265 (-) 1065 WP_182928767.1 AI-2E family transporter -
  PGN40_RS17525 (PGN40_17525) - 3506361..3506501 (-) 141 WP_019391380.1 YrzQ family protein -
  PGN40_RS17530 (PGN40_17530) - 3506517..3506708 (-) 192 WP_040056833.1 hypothetical protein -
  PGN40_RS17535 (PGN40_17535) - 3507014..3507742 (+) 729 WP_019391378.1 ZIP family metal transporter -
  PGN40_RS17540 (PGN40_17540) recD2 3507782..3510145 (-) 2364 WP_040056834.1 ATP-dependent RecD-like DNA helicase Machinery gene
  PGN40_RS17545 (PGN40_17545) - 3510160..3510816 (-) 657 WP_019391376.1 tetratricopeptide repeat protein -
  PGN40_RS17550 (PGN40_17550) mnmA 3510920..3512032 (-) 1113 WP_019391375.1 tRNA 2-thiouridine(34) synthase MnmA -
  PGN40_RS17555 (PGN40_17555) - 3512050..3513192 (-) 1143 WP_120045994.1 cysteine desulfurase family protein -
  PGN40_RS17560 (PGN40_17560) cymR 3513221..3513640 (-) 420 WP_019391373.1 cysteine metabolism transcriptional regulator CymR -

Sequence

Protein


Download         Length: 787 a.a.        Molecular weight: 88789.01 Da        Isoelectric Point: 4.7244

>NTDB_id=774388 PGN40_RS17540 WP_040056834.1 3507782..3510145(-) (recD2) [Priestia filamentosa strain AZC66]
MQEELKNVVDKSDDRPFVKGKISATIFHNEDNLYTVAKISVGETNVHISDDNLTVTGYLPPLHEGERYTFYGQLKEHPRF
GWQFQADMFQKELPHSREGVISYLSSDLFKGIGKKTAEKIVDTLGDQAILRILQDRENLRGVANLSSEKADALYEALVEN
RGLEDVMIKLSQYGFGPQLSMKIFQTYKHEALQIINENPYQLVEDIDGIGFKRADELGGKLGIKGAHPDRIRAGLAFVVE
KQCVQDGHTYLSQTQLFDWTVELLRSDEEIKIEDLEQGLAALTKEKKLFVKEERIYIPSLYYAEKGIVNVIEDLLAQTQY
EDQFPESEFLLALGELEERLDIQYAPSQREAIQRALMSPMMVLTGGPGTGKTTVIKGIVELYAELHGCSLDPTSYKKDEP
FPVLLVAPTGRAAKRMSEATGLPAVTIHRLLKWNGQEGFDHDEEDPIKGRLLIVDEVSMVDTWLAHQLFRALPEDMQVVL
VGDEDQLPSVGPGQVLTDLLTSDIVPVVRLVDIYRQEEGSSIIELAHMIKDGKMPDDIRKPQGDRSFLTCYQGQITEVVK
QVCQNAIKKGFTARDIQVLAPMYKGNAGIDHLNVALQELFNPSSHKRREIQYGSVSYRVGDKVLQLVNQPESNVFNGDIG
EIVSVFYAKENTEKQDMLVISFDGNEVSYTKADFNQITHAYCCSIHKSQGSEFPIVVLPVVRSYYRMLKRNLIYTAITRS
KQFLILCGEEEALKIGISRADDGKRQTTLASFLKADEQEWDENEAPFMKDAMIGMENVTPYDFMEAD

Nucleotide


Download         Length: 2364 bp        

>NTDB_id=774388 PGN40_RS17540 WP_040056834.1 3507782..3510145(-) (recD2) [Priestia filamentosa strain AZC66]
ATGCAGGAAGAGTTAAAAAATGTTGTAGACAAGAGTGATGACCGTCCATTTGTGAAAGGAAAGATTTCAGCAACTATTTT
TCATAATGAGGATAACTTGTATACAGTAGCTAAAATTTCGGTTGGAGAAACGAATGTTCATATTAGTGATGACAACCTTA
CTGTCACAGGATATCTTCCTCCTTTACATGAAGGAGAACGATATACATTTTATGGGCAGTTAAAAGAACACCCACGTTTT
GGATGGCAGTTTCAAGCGGATATGTTTCAAAAAGAGCTTCCACATTCAAGAGAAGGCGTTATCTCTTATCTTTCAAGTGA
CCTATTTAAAGGAATCGGAAAAAAAACAGCTGAAAAAATTGTGGATACACTAGGAGACCAAGCTATTTTACGTATTCTTC
AAGATCGTGAGAATTTGCGAGGTGTAGCAAATCTGTCAAGTGAAAAAGCTGATGCTCTTTATGAAGCGCTTGTCGAAAAT
CGCGGTTTAGAAGATGTTATGATCAAGCTTTCTCAATATGGATTTGGCCCTCAGCTTTCCATGAAAATTTTCCAAACATA
TAAGCATGAAGCACTACAGATTATTAATGAAAATCCGTATCAGCTTGTGGAGGATATTGACGGGATTGGCTTTAAACGGG
CAGATGAGCTTGGAGGAAAACTTGGTATTAAAGGAGCTCATCCAGACCGGATTCGAGCGGGACTTGCTTTTGTAGTTGAA
AAACAATGTGTACAAGATGGGCATACGTATTTATCTCAAACACAGCTTTTTGATTGGACTGTTGAACTTCTACGTTCAGA
TGAGGAAATAAAGATAGAGGATTTAGAACAAGGTCTCGCAGCATTAACAAAAGAAAAGAAGCTTTTTGTAAAAGAAGAAA
GAATCTATATTCCATCCCTCTACTATGCAGAAAAAGGAATAGTGAACGTTATTGAGGATCTTTTAGCTCAAACTCAGTAC
GAAGACCAATTCCCAGAGTCGGAGTTTCTGCTAGCGCTTGGTGAACTTGAAGAACGCTTAGATATCCAATATGCGCCGTC
TCAGCGTGAAGCAATTCAAAGAGCGTTGATGTCACCAATGATGGTTCTCACAGGAGGCCCTGGAACAGGAAAAACAACGG
TTATCAAAGGAATTGTTGAACTGTATGCTGAGCTTCATGGCTGCTCTCTTGATCCAACTAGCTATAAAAAAGATGAACCT
TTTCCCGTTCTTCTTGTAGCACCAACAGGTAGAGCCGCAAAGCGGATGAGTGAAGCAACAGGGTTACCTGCTGTTACAAT
TCATCGACTTTTAAAATGGAATGGACAAGAAGGATTTGATCATGATGAAGAAGATCCAATTAAAGGTCGTCTTCTTATTG
TTGATGAAGTCTCAATGGTAGATACGTGGCTCGCTCATCAGCTTTTCCGTGCTCTTCCAGAAGATATGCAAGTAGTTCTT
GTTGGAGATGAAGATCAGCTTCCATCAGTTGGCCCTGGGCAAGTATTAACAGACTTGCTAACATCAGATATTGTACCCGT
TGTTCGGCTTGTCGATATTTACAGACAAGAAGAAGGGTCCTCAATTATTGAGCTTGCTCATATGATTAAAGATGGAAAAA
TGCCTGATGATATTCGTAAGCCACAAGGAGATAGATCCTTTCTAACCTGTTATCAAGGACAAATTACCGAAGTTGTCAAA
CAAGTATGTCAGAATGCGATTAAGAAGGGATTTACAGCTCGGGATATTCAAGTGTTAGCTCCTATGTATAAAGGGAATGC
AGGAATTGATCATCTCAATGTGGCCCTTCAAGAGCTTTTTAACCCTTCGTCACATAAAAGACGAGAAATTCAGTATGGAA
GTGTTTCATATCGCGTTGGAGATAAAGTATTGCAGCTTGTGAATCAGCCAGAAAGCAATGTATTTAATGGAGATATCGGA
GAAATTGTATCTGTTTTTTACGCAAAAGAAAATACAGAAAAACAAGATATGCTCGTTATTTCCTTTGATGGAAATGAAGT
ATCATATACAAAAGCAGATTTTAACCAAATTACTCATGCCTATTGCTGCTCTATTCATAAATCCCAAGGAAGCGAATTTC
CAATCGTTGTACTGCCTGTTGTAAGAAGCTATTATAGAATGTTAAAACGCAATCTAATTTATACAGCTATCACTAGAAGT
AAACAGTTTCTTATTCTATGTGGAGAAGAAGAAGCATTGAAAATTGGAATAAGTCGAGCTGATGATGGTAAAAGACAAAC
AACTTTAGCTTCGTTCTTAAAAGCAGACGAGCAAGAGTGGGATGAGAATGAAGCTCCTTTCATGAAAGATGCAATGATTG
GGATGGAAAACGTTACCCCATATGATTTTATGGAAGCAGATTGA

Domains

Predicted by InterproScan.

AAA domain (AAA_30)

(344-539)

UvrD-like helicase C-terminal domain (UvrD_C_2)

(679-727)

Helix-hairpin-helix containing domain (HHH_RecD2)

(159-250)

ATP-dependent RecD-like DNA helicase SH3 domain (SH3_13)

(592-661)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB A0A1X7CVH7

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  recD2 Bacillus subtilis subsp. subtilis str. 168

61.041

100

0.611