Detailed information    

insolico Bioinformatically predicted

Overview

Name   comGB   Type   Machinery gene
Locus tag   PCM89_RS07750 Genome accession   NZ_CP115887
Coordinates   1617468..1618538 (-) Length   356 a.a.
NCBI ID   WP_000776403.1    Uniprot ID   -
Organism   Staphylococcus aureus strain C308     
Function   dsDNA binding to the cell surface; assembly of the pseudopilus (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 1612468..1623538
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  PCM89_RS07710 (PCM89_07710) gcvPA 1612645..1613991 (-) 1347 WP_000019688.1 aminomethyl-transferring glycine dehydrogenase subunit GcvPA -
  PCM89_RS07715 (PCM89_07715) gcvT 1614011..1615102 (-) 1092 WP_000093355.1 glycine cleavage system aminomethyltransferase GcvT -
  PCM89_RS07720 (PCM89_07720) - 1615261..1615785 (-) 525 WP_001015122.1 shikimate kinase -
  PCM89_RS07725 (PCM89_07725) - 1615775..1615921 (-) 147 WP_001789879.1 hypothetical protein -
  PCM89_RS07730 (PCM89_07730) comGF 1616018..1616515 (-) 498 WP_029697681.1 competence type IV pilus minor pilin ComGF Machinery gene
  PCM89_RS07735 (PCM89_07735) comGE 1616433..1616732 (-) 300 WP_000844413.1 hypothetical protein Machinery gene
  PCM89_RS07740 (PCM89_07740) comGD 1616719..1617165 (-) 447 WP_075583651.1 competence type IV pilus minor pilin ComGD Machinery gene
  PCM89_RS07745 (PCM89_07745) comGC 1617143..1617454 (-) 312 WP_000472256.1 competence type IV pilus major pilin ComGC Machinery gene
  PCM89_RS07750 (PCM89_07750) comGB 1617468..1618538 (-) 1071 WP_000776403.1 competence type IV pilus assembly protein ComGB Machinery gene
  PCM89_RS07755 (PCM89_07755) comGA 1618510..1619484 (-) 975 WP_000697215.1 competence type IV pilus ATPase ComGA Machinery gene
  PCM89_RS07760 (PCM89_07760) - 1619536..1620159 (-) 624 WP_001223006.1 MBL fold metallo-hydrolase -
  PCM89_RS07765 (PCM89_07765) - 1620156..1620485 (-) 330 WP_001018871.1 MTH1187 family thiamine-binding protein -
  PCM89_RS07770 (PCM89_07770) - 1620485..1621471 (-) 987 WP_000161315.1 ROK family glucokinase -
  PCM89_RS07775 (PCM89_07775) - 1621468..1621671 (-) 204 WP_000087561.1 YqgQ family protein -
  PCM89_RS07780 (PCM89_07780) - 1621652..1623115 (-) 1464 WP_001017872.1 rhomboid family protein -

Sequence

Protein


Download         Length: 356 a.a.        Molecular weight: 41487.99 Da        Isoelectric Point: 10.1030

>NTDB_id=774167 PCM89_RS07750 WP_000776403.1 1617468..1618538(-) (comGB) [Staphylococcus aureus strain C308]
MKLQWINTFKLHSKKRQLSKAQQIDLLLNLCNLLKYGFTLYQSFQFLNLQMTYKNKQLGTTILSEISNGAPCNQILSLIG
YSDTIVMQVYLAERFGNIIDVLEETVNYMKVNRKSEQRLLKTLQYPLILVSIFIAMIIILNLTVIPQFQQLYTSMNIQLS
SFQKTLSFFITSLPTIIVVMLIIVSMLAIIMKLIYNKLNMLNKINFVMKLPLISGYFQLFKTYFVTNELVLFYKNGITLQ
SIVDVYINHSSDPFRQFLGKYLLTYSEMGYGLPQILEKLKCFKPQLIKFVLQGEKRGKLEVELKLYSQILVKQIEDKAIK
QTQFLQPILFLILGLFIVAIYLVIMLPMFQMMQSIK

Nucleotide


Download         Length: 1071 bp        

>NTDB_id=774167 PCM89_RS07750 WP_000776403.1 1617468..1618538(-) (comGB) [Staphylococcus aureus strain C308]
GTGAAACTACAATGGATAAATACATTTAAACTACATTCTAAGAAGCGACAATTAAGTAAGGCCCAACAAATCGATTTACT
TTTAAATTTATGTAATTTGTTGAAATATGGTTTCACTCTGTATCAAAGTTTTCAATTTTTAAATCTTCAAATGACATATA
AAAATAAGCAATTAGGCACCACCATTCTAAGTGAAATTTCAAATGGTGCACCATGCAACCAGATATTATCACTGATAGGT
TATAGCGATACTATCGTCATGCAAGTATATTTGGCAGAAAGATTTGGCAATATCATAGACGTTCTAGAAGAAACCGTAAA
TTATATGAAAGTGAATAGAAAGTCAGAACAACGATTGTTAAAGACACTGCAATACCCCTTAATACTAGTTTCGATTTTTA
TTGCTATGATTATTATATTAAACCTCACAGTAATTCCACAGTTTCAACAATTATATACTTCTATGAATATTCAACTATCT
TCTTTTCAAAAAACATTGTCTTTTTTCATTACCAGCTTACCTACTATAATTGTAGTAATGCTCATAATAGTATCTATGTT
GGCTATTATTATGAAATTAATTTATAACAAATTAAATATGCTCAATAAGATAAACTTTGTGATGAAACTACCGCTAATAT
CGGGCTATTTCCAATTATTTAAAACTTATTTTGTAACTAATGAATTAGTGTTATTTTATAAAAATGGTATTACACTTCAA
TCAATAGTAGACGTTTATATTAACCATAGTAGTGATCCATTTAGACAGTTTCTAGGTAAATACTTATTAACTTATTCAGA
AATGGGATATGGTTTACCTCAAATTTTAGAAAAACTAAAATGCTTTAAGCCTCAATTAATTAAGTTTGTGCTACAAGGTG
AAAAGAGAGGAAAGCTAGAAGTAGAACTAAAGTTATATTCGCAAATATTAGTAAAACAAATAGAAGATAAAGCGATAAAA
CAGACTCAGTTTTTACAGCCTATTTTATTTTTGATTTTAGGTTTATTTATTGTCGCAATTTATTTGGTAATTATGTTACC
AATGTTTCAAATGATGCAAAGTATAAAATAA

Domains

Predicted by InterproScan.

Type II secretion system (T2SS), protein F (T2SSF)

(227-347)

Type II secretion system (T2SS), protein F (T2SSF)

(29-146)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comGB Staphylococcus aureus MW2

99.438

100

0.994
  comGB Staphylococcus aureus N315

99.438

100

0.994