Detailed information
Bioinformatically predicted
Overview
| Name | codY | Type | Regulator |
| Locus tag | PCT00_RS18985 | Genome accession | NZ_CP115870 |
| Coordinates | 3641442..3642221 (-) | Length | 259 a.a. |
| NCBI ID | WP_000421288.1 | Uniprot ID | Q81WK7 |
| Organism | Bacillus anthracis strain IAL 52 | ||
| Function | repression of comK (predicted from homology) Competence regulation |
||
Related MGE
Note: This gene co-localizes with putative mobile genetic elements (MGEs) in the genome predicted by VRprofile2, as detailed below.
Gene-MGE association summary
| MGE type | MGE coordinates | Gene coordinates | Relative position | Distance (bp) |
|---|---|---|---|---|
| ICE | 3607120..3681043 | 3641442..3642221 | within | 0 |
Gene organization within MGE regions
Location: 3607120..3681043
| Locus tag | Gene name | Coordinates (strand) | Size (bp) | Protein ID | Product | Description |
|---|---|---|---|---|---|---|
| PCT00_RS18835 (PCT00_18805) | - | 3607464..3609134 (-) | 1671 | WP_000823085.1 | ribonuclease J | - |
| PCT00_RS18840 (PCT00_18810) | dapA | 3609900..3610778 (-) | 879 | WP_000564761.1 | 4-hydroxy-tetrahydrodipicolinate synthase | - |
| PCT00_RS18845 (PCT00_18815) | dapG | 3610790..3612022 (-) | 1233 | WP_000692470.1 | aspartate kinase | - |
| PCT00_RS18850 (PCT00_18820) | asd | 3612046..3613092 (-) | 1047 | WP_000414849.1 | aspartate-semialdehyde dehydrogenase | - |
| PCT00_RS18855 (PCT00_18825) | dpaB | 3613243..3613842 (-) | 600 | WP_001049484.1 | dipicolinate synthase subunit B | - |
| PCT00_RS18860 (PCT00_18830) | dpaA | 3613839..3614741 (-) | 903 | WP_000954726.1 | dipicolinic acid synthetase subunit A | - |
| PCT00_RS18865 (PCT00_18835) | - | 3615016..3615267 (-) | 252 | WP_001239752.1 | YlmC/YmxH family sporulation protein | - |
| PCT00_RS18870 (PCT00_18840) | - | 3615394..3616635 (-) | 1242 | WP_000592993.1 | pitrilysin family protein | - |
| PCT00_RS18875 (PCT00_18845) | - | 3616722..3617621 (-) | 900 | WP_000647529.1 | polysaccharide deacetylase family protein | - |
| PCT00_RS18880 (PCT00_18850) | pnp | 3617773..3619911 (-) | 2139 | WP_000076733.1 | polyribonucleotide nucleotidyltransferase | - |
| PCT00_RS18885 (PCT00_18855) | rpsO | 3620072..3620341 (-) | 270 | WP_001229392.1 | 30S ribosomal protein S15 | - |
| PCT00_RS18890 (PCT00_18860) | ribF | 3620442..3621413 (-) | 972 | WP_000766711.1 | bifunctional riboflavin kinase/FAD synthetase | - |
| PCT00_RS18895 (PCT00_18865) | truB | 3621457..3622380 (-) | 924 | WP_000399357.1 | tRNA pseudouridine(55) synthase TruB | - |
| PCT00_RS18900 (PCT00_18870) | rbfA | 3622467..3622823 (-) | 357 | WP_000776446.1 | 30S ribosome-binding factor RbfA | - |
| PCT00_RS18905 (PCT00_18875) | - | 3622839..3623120 (-) | 282 | WP_000582364.1 | DUF503 domain-containing protein | - |
| PCT00_RS18910 (PCT00_18880) | infB | 3623117..3625177 (-) | 2061 | WP_000036339.1 | translation initiation factor IF-2 | - |
| PCT00_RS18915 (PCT00_18885) | - | 3625182..3625493 (-) | 312 | WP_001286523.1 | YlxQ family RNA-binding protein | - |
| PCT00_RS18920 (PCT00_18890) | rnpM | 3625494..3625766 (-) | 273 | WP_000071128.1 | RNase P modulator RnpM | - |
| PCT00_RS18925 (PCT00_18895) | nusA | 3625778..3626884 (-) | 1107 | WP_000102609.1 | transcription termination factor NusA | - |
| PCT00_RS18930 (PCT00_18900) | rimP | 3626902..3627372 (-) | 471 | WP_000359097.1 | ribosome maturation factor RimP | - |
| PCT00_RS18935 (PCT00_18905) | - | 3627705..3632006 (-) | 4302 | WP_000059985.1 | PolC-type DNA polymerase III | - |
| PCT00_RS18940 (PCT00_18910) | - | 3632131..3633831 (-) | 1701 | WP_000814312.1 | proline--tRNA ligase | - |
| PCT00_RS18945 (PCT00_18915) | rseP | 3633941..3635197 (-) | 1257 | WP_001090228.1 | RIP metalloprotease RseP | - |
| PCT00_RS18950 (PCT00_18920) | dxr | 3635214..3636356 (-) | 1143 | WP_000790359.1 | 1-deoxy-D-xylulose-5-phosphate reductoisomerase | - |
| PCT00_RS18955 (PCT00_18925) | cdsA | 3636380..3637171 (-) | 792 | WP_000813581.1 | phosphatidate cytidylyltransferase | - |
| PCT00_RS18960 (PCT00_18930) | uppS | 3637189..3637965 (-) | 777 | WP_000971303.1 | isoprenyl transferase | - |
| PCT00_RS18965 (PCT00_18935) | frr | 3638051..3638608 (-) | 558 | WP_000531503.1 | ribosome recycling factor | - |
| PCT00_RS18970 (PCT00_18940) | pyrH | 3638611..3639333 (-) | 723 | WP_000042663.1 | UMP kinase | - |
| PCT00_RS18975 (PCT00_18945) | tsf | 3639400..3640287 (-) | 888 | WP_001018581.1 | translation elongation factor Ts | - |
| PCT00_RS18980 (PCT00_18950) | rpsB | 3640391..3641092 (-) | 702 | WP_000111483.1 | 30S ribosomal protein S2 | - |
| PCT00_RS18985 (PCT00_18955) | codY | 3641442..3642221 (-) | 780 | WP_000421288.1 | GTP-sensing pleiotropic transcriptional regulator CodY | Regulator |
| PCT00_RS18990 (PCT00_18960) | hslU | 3642299..3643690 (-) | 1392 | WP_000550088.1 | ATP-dependent protease ATPase subunit HslU | - |
| PCT00_RS18995 (PCT00_18965) | hslV | 3643713..3644255 (-) | 543 | WP_000526272.1 | ATP-dependent protease proteolytic subunit HslV | - |
| PCT00_RS19000 (PCT00_18970) | xerC | 3644298..3645197 (-) | 900 | WP_001101226.1 | tyrosine recombinase XerC | - |
| PCT00_RS19005 (PCT00_18975) | trmFO | 3645263..3646567 (-) | 1305 | WP_003161605.1 | FADH(2)-oxidizing methylenetetrahydrofolate--tRNA-(uracil(54)-C(5))- methyltransferase TrmFO | - |
| PCT00_RS19010 (PCT00_18980) | topA | 3646618..3648696 (-) | 2079 | WP_001286969.1 | type I DNA topoisomerase | - |
| PCT00_RS19015 (PCT00_18985) | dprA | 3648841..3649589 (-) | 749 | Protein_3703 | DNA-processing protein DprA | - |
| PCT00_RS19020 (PCT00_18990) | sucD | 3649797..3650699 (-) | 903 | WP_000115178.1 | succinate--CoA ligase subunit alpha | - |
| PCT00_RS19025 (PCT00_18995) | sucC | 3650720..3651880 (-) | 1161 | WP_001020786.1 | ADP-forming succinate--CoA ligase subunit beta | - |
| PCT00_RS19030 (PCT00_19000) | rnhB | 3652074..3652847 (-) | 774 | WP_025706620.1 | ribonuclease HII | - |
| PCT00_RS19035 (PCT00_19005) | ylqF | 3652899..3653789 (-) | 891 | WP_000236707.1 | ribosome biogenesis GTPase YlqF | - |
| PCT00_RS19040 (PCT00_19010) | lepB | 3653810..3654361 (-) | 552 | WP_000711857.1 | signal peptidase I | - |
| PCT00_RS19045 (PCT00_19015) | rplS | 3654463..3654807 (-) | 345 | WP_001186516.1 | 50S ribosomal protein L19 | - |
| PCT00_RS19050 (PCT00_19020) | trmD | 3654954..3655688 (-) | 735 | WP_000686892.1 | tRNA (guanosine(37)-N1)-methyltransferase TrmD | - |
| PCT00_RS19055 (PCT00_19025) | rimM | 3655688..3656203 (-) | 516 | WP_000170269.1 | ribosome maturation factor RimM | - |
| PCT00_RS19060 (PCT00_19030) | - | 3656324..3656551 (-) | 228 | WP_000737398.1 | KH domain-containing protein | - |
| PCT00_RS19065 (PCT00_19035) | rpsP | 3656566..3656838 (-) | 273 | WP_000268750.1 | 30S ribosomal protein S16 | - |
| PCT00_RS19070 (PCT00_19040) | ffh | 3656939..3658288 (-) | 1350 | WP_000863456.1 | signal recognition particle protein | - |
| PCT00_RS19075 (PCT00_19045) | - | 3658301..3658633 (-) | 333 | WP_000891062.1 | putative DNA-binding protein | - |
| PCT00_RS19080 (PCT00_19050) | ftsY | 3658766..3659755 (-) | 990 | WP_000007650.1 | signal recognition particle-docking protein FtsY | - |
| PCT00_RS19085 (PCT00_19055) | smc | 3659771..3663340 (-) | 3570 | WP_000478985.1 | chromosome segregation protein SMC | - |
| PCT00_RS19090 (PCT00_19060) | rncS | 3663487..3664224 (-) | 738 | WP_001146873.1 | ribonuclease III | - |
| PCT00_RS19095 (PCT00_19065) | acpP | 3664283..3664516 (-) | 234 | WP_000786062.1 | acyl carrier protein | - |
| PCT00_RS19100 (PCT00_19070) | fabG | 3664586..3665326 (-) | 741 | WP_000911782.1 | 3-oxoacyl-[acyl-carrier-protein] reductase | - |
| PCT00_RS19105 (PCT00_19075) | fabD | 3665326..3666270 (-) | 945 | WP_000516958.1 | ACP S-malonyltransferase | - |
| PCT00_RS19110 (PCT00_19080) | plsX | 3666285..3667277 (-) | 993 | WP_000684111.1 | phosphate acyltransferase PlsX | - |
| PCT00_RS19115 (PCT00_19085) | fapR | 3667274..3667867 (-) | 594 | WP_000747352.1 | transcription factor FapR | - |
| PCT00_RS19120 (PCT00_19090) | recG | 3667956..3670004 (-) | 2049 | WP_001006884.1 | ATP-dependent DNA helicase RecG | - |
| PCT00_RS19125 (PCT00_19095) | - | 3670294..3671970 (-) | 1677 | WP_000027136.1 | DAK2 domain-containing protein | - |
| PCT00_RS19130 (PCT00_19100) | - | 3671993..3672355 (-) | 363 | WP_000021109.1 | Asp23/Gls24 family envelope stress response protein | - |
| PCT00_RS19135 (PCT00_19105) | rpmB | 3672734..3672922 (+) | 189 | WP_000124778.1 | 50S ribosomal protein L28 | - |
| PCT00_RS19140 (PCT00_19110) | spoVM | 3672995..3673075 (-) | 81 | WP_001213599.1 | stage V sporulation protein SpoVM | - |
| PCT00_RS19145 (PCT00_19115) | - | 3673142..3673822 (-) | 681 | WP_025388434.1 | thiamine diphosphokinase | - |
| PCT00_RS19150 (PCT00_19120) | rpe | 3673922..3674566 (-) | 645 | WP_000589966.1 | ribulose-phosphate 3-epimerase | - |
| PCT00_RS19155 (PCT00_19125) | rsgA | 3674569..3675450 (-) | 882 | WP_001113935.1 | ribosome small subunit-dependent GTPase A | - |
| PCT00_RS19160 (PCT00_19130) | prkC | 3675719..3677692 (-) | 1974 | WP_000904759.1 | serine/threonine protein kinase PrkC | - |
| PCT00_RS19165 (PCT00_19135) | - | 3677701..3678453 (-) | 753 | WP_000648699.1 | Stp1/IreP family PP2C-type Ser/Thr phosphatase | - |
| PCT00_RS19170 (PCT00_19140) | rlmN | 3678458..3679546 (-) | 1089 | WP_000450543.1 | 23S rRNA (adenine(2503)-C(2))-methyltransferase RlmN | - |
| PCT00_RS19175 (PCT00_19145) | rsmB | 3679551..3680885 (-) | 1335 | WP_001249680.1 | 16S rRNA (cytosine(967)-C(5))-methyltransferase RsmB | - |
Sequence
Protein
Download Length: 259 a.a. Molecular weight: 28774.05 Da Isoelectric Point: 4.7947
>NTDB_id=774083 PCT00_RS18985 WP_000421288.1 3641442..3642221(-) (codY) [Bacillus anthracis strain IAL 52]
MELLAKTRKLNALLQSAAGKPVNFREMSDTMCEVIEANVFVVSRRGKLLGYAIHQQIENERMKQMLAERQFPEEYTQSLF
NITETSSNLDVNSAYTAFPVENKELFGQGLTTIVPIVGGGERLGTLVLARLGQEFLDDDLILAEYSSTVVGMEILREKAE
EIEEEARSKAVVQMAISSLSYSELEAIEHIFEELNGTEGLLVASKIADRVGITRSVIVNALRKLESAGVIESRSLGMKGT
YIKVLNDKFLHELAKLKTN
MELLAKTRKLNALLQSAAGKPVNFREMSDTMCEVIEANVFVVSRRGKLLGYAIHQQIENERMKQMLAERQFPEEYTQSLF
NITETSSNLDVNSAYTAFPVENKELFGQGLTTIVPIVGGGERLGTLVLARLGQEFLDDDLILAEYSSTVVGMEILREKAE
EIEEEARSKAVVQMAISSLSYSELEAIEHIFEELNGTEGLLVASKIADRVGITRSVIVNALRKLESAGVIESRSLGMKGT
YIKVLNDKFLHELAKLKTN
Nucleotide
Download Length: 780 bp
>NTDB_id=774083 PCT00_RS18985 WP_000421288.1 3641442..3642221(-) (codY) [Bacillus anthracis strain IAL 52]
ATGGAATTATTAGCAAAAACAAGAAAATTAAATGCGTTATTACAGAGCGCAGCAGGAAAGCCTGTAAACTTTAGAGAAAT
GTCTGACACAATGTGTGAAGTAATCGAAGCGAACGTATTCGTAGTAAGTCGTCGTGGTAAATTACTAGGTTATGCAATTC
ACCAACAAATCGAGAATGAGCGTATGAAACAAATGCTTGCAGAACGTCAATTCCCAGAAGAGTATACACAAAGCTTATTC
AACATTACAGAAACATCTTCAAACTTAGATGTAAACAGTGCTTACACAGCATTCCCAGTAGAAAATAAAGAATTATTTGG
TCAAGGTTTAACTACAATCGTACCGATCGTTGGTGGCGGTGAGCGTCTAGGTACATTAGTTTTAGCTCGTCTTGGTCAAG
AGTTCTTAGATGATGATTTAATTCTTGCTGAGTACAGCTCAACTGTTGTAGGTATGGAAATTTTACGTGAAAAAGCAGAA
GAAATCGAAGAAGAAGCACGTAGCAAAGCTGTTGTTCAAATGGCGATCAGCTCATTATCTTACAGTGAATTAGAAGCAAT
CGAGCACATCTTCGAAGAATTAAACGGAACAGAAGGTTTACTTGTTGCAAGTAAAATTGCTGACCGCGTAGGAATCACTC
GTTCGGTAATCGTAAATGCACTTCGTAAATTAGAAAGTGCTGGTGTAATTGAGTCGCGTTCTTTAGGTATGAAAGGAACA
TACATTAAAGTATTAAACGACAAATTCTTACATGAACTTGCTAAATTAAAAACAAACTAA
ATGGAATTATTAGCAAAAACAAGAAAATTAAATGCGTTATTACAGAGCGCAGCAGGAAAGCCTGTAAACTTTAGAGAAAT
GTCTGACACAATGTGTGAAGTAATCGAAGCGAACGTATTCGTAGTAAGTCGTCGTGGTAAATTACTAGGTTATGCAATTC
ACCAACAAATCGAGAATGAGCGTATGAAACAAATGCTTGCAGAACGTCAATTCCCAGAAGAGTATACACAAAGCTTATTC
AACATTACAGAAACATCTTCAAACTTAGATGTAAACAGTGCTTACACAGCATTCCCAGTAGAAAATAAAGAATTATTTGG
TCAAGGTTTAACTACAATCGTACCGATCGTTGGTGGCGGTGAGCGTCTAGGTACATTAGTTTTAGCTCGTCTTGGTCAAG
AGTTCTTAGATGATGATTTAATTCTTGCTGAGTACAGCTCAACTGTTGTAGGTATGGAAATTTTACGTGAAAAAGCAGAA
GAAATCGAAGAAGAAGCACGTAGCAAAGCTGTTGTTCAAATGGCGATCAGCTCATTATCTTACAGTGAATTAGAAGCAAT
CGAGCACATCTTCGAAGAATTAAACGGAACAGAAGGTTTACTTGTTGCAAGTAAAATTGCTGACCGCGTAGGAATCACTC
GTTCGGTAATCGTAAATGCACTTCGTAAATTAGAAAGTGCTGGTGTAATTGAGTCGCGTTCTTTAGGTATGAAAGGAACA
TACATTAAAGTATTAAACGACAAATTCTTACATGAACTTGCTAAATTAAAAACAAACTAA
Similar proteins
Only experimentally validated proteins are listed.
| Protein | Organism | Identities (%) | Coverage (%) | Ha-value |
|---|---|---|---|---|
| codY | Bacillus subtilis subsp. subtilis str. 168 |
81.081 |
100 |
0.811 |
| codY | Lactococcus lactis subsp. lactis strain DGCC12653 |
46.667 |
98.456 |
0.459 |