Detailed information NTG0774059

Bioinformatically predicted

Overview

• Name: rarA
• Type: Machinery gene
• Locus tag: QTN46_RS13975
• Genome accession: NZ_CP128501
• Coordinates: 2576393..2577661 (+)
• Length: 422 a.a.
• NCBI ID: WP_013353023.1
• Uniprot ID: A0A9P1NII9
• Organism: Bacillus amyloliquefaciens strain SRCM123386
• Function: homologous recombination (predicted from homology) Homologous recombination

Genomic Context

Location: 2571393..2582661

Locus tag	Gene name	Coordinates (strand)	Size (bp)	Protein ID	Product	Description
QTN46_RS13955 (QTN46_13955)	-	2572764..2573384 (-)	621	WP_088030693.1	tetratricopeptide repeat protein	-
QTN46_RS13960 (QTN46_13960)	mnmA	2573472..2574587 (-)	1116	WP_013353020.1	tRNA 2-thiouridine(34) synthase MnmA	-
QTN46_RS13965 (QTN46_13965)	-	2574624..2575763 (-)	1140	WP_013353021.1	cysteine desulfurase family protein	-
QTN46_RS13970 (QTN46_13970)	cymR	2575782..2576198 (-)	417	WP_013353022.1	cysteine metabolism transcriptional regulator CymR	-
QTN46_RS13975 (QTN46_13975)	rarA	2576393..2577661 (+)	1269	WP_013353023.1	replication-associated recombination protein A	Machinery gene
QTN46_RS13980 (QTN46_13980)	-	2577779..2578543 (-)	765	WP_289393773.1	tRNA threonylcarbamoyladenosine dehydratase	-
QTN46_RS13990 (QTN46_13990)	aspS	2578870..2580648 (-)	1779	WP_289393774.1	aspartate--tRNA ligase	-
QTN46_RS13995 (QTN46_13995)	hisS	2580663..2581937 (-)	1275	WP_013353026.1	histidine--tRNA ligase	-
QTN46_RS14000 (QTN46_14000)	-	2582317..2582487 (-)	171	WP_014470770.1	YrzK family protein	-

Sequence

Protein

• Length: 422 a.a.
• Molecular weight: 46685.56 Da
• Isoelectric Point: 8.2451

>NTDB_id=774059 QTN46_RS13975 WP_013353023.1 2576393..2577661(+) (rarA) [Bacillus amyloliquefaciens strain SRCM123386]
MKPLAYRMRPANIEDIIGQEHLVKEDKIIGRMVRAKHLSSMILYGPPGIGKTSIATAIAGSTSIAFRKLNAVIHNKKDME
IVVQEAKMSGQVILILDEVHRLDKGKQDFLLPYLENGMIILIGATTANPYHAINPAIRSRTQIFELEPLTPDLIKQALRR
ALTDEHRGLGSYSVSVDDEAMDHFAQGCGGDVRSALNALELAVLSTKESSDGTIRITRETAEECLQKKSYTHDKDGDAHY
DVLSAFQKSIRGSDANAALHYLARLIEAGDLESISRRLLVIAYEDIGLASPQAGPRVLSAIQTAERIGFPEARIPLANAV
IELCLSPKSNSAISAVDEALKDIRSGKIGDVPKHLKDAHYKGAQELGRGIGYQYPHDFENGWVEQQYLPEPLKNKQYYKP
KQTGKFEAAIKQVYEKLLKQKK

Nucleotide

• Length: 1269 bp

>NTDB_id=774059 QTN46_RS13975 WP_013353023.1 2576393..2577661(+) (rarA) [Bacillus amyloliquefaciens strain SRCM123386]
ATGAAACCATTGGCGTATCGGATGCGGCCTGCCAATATCGAAGACATTATCGGCCAGGAACATTTGGTCAAAGAAGATAA
AATCATCGGCAGAATGGTGCGCGCAAAGCACCTATCATCCATGATCCTGTACGGACCGCCAGGCATCGGAAAAACGTCCA
TCGCCACAGCGATCGCAGGATCGACAAGCATCGCATTCAGAAAATTGAATGCCGTCATTCATAATAAAAAAGACATGGAA
ATTGTCGTACAGGAAGCGAAAATGTCAGGTCAGGTCATCTTAATACTTGATGAAGTGCACAGGCTTGATAAGGGGAAGCA
GGATTTTCTCCTGCCCTATTTAGAAAACGGCATGATTATTTTAATCGGCGCGACGACCGCCAATCCTTATCATGCCATTA
ACCCGGCCATCAGAAGCCGTACCCAGATATTCGAACTCGAACCGTTAACACCGGATCTGATCAAGCAGGCATTGAGAAGA
GCGCTCACAGATGAACACCGGGGACTCGGTTCCTACAGCGTTTCGGTGGACGACGAAGCGATGGATCATTTCGCGCAAGG
GTGTGGAGGAGACGTCCGTTCCGCTTTGAACGCACTGGAGCTTGCCGTGCTTTCCACAAAGGAATCAAGTGACGGCACGA
TCCGCATTACGCGGGAAACAGCGGAAGAATGTCTGCAGAAAAAAAGCTATACCCATGATAAAGACGGAGATGCGCATTAT
GACGTCTTATCCGCATTCCAAAAATCAATCCGCGGCTCAGACGCAAACGCCGCACTTCATTATTTAGCCCGACTGATCGA
AGCCGGCGATCTTGAAAGCATTTCAAGAAGACTTCTCGTAATCGCCTATGAAGATATCGGCCTTGCAAGCCCGCAGGCAG
GCCCCCGGGTGCTGAGCGCGATTCAGACCGCAGAGCGGATCGGCTTTCCCGAAGCGAGAATTCCGCTGGCGAATGCGGTA
ATCGAATTATGCCTTTCGCCAAAATCAAACTCCGCCATCTCAGCCGTTGATGAAGCGCTCAAAGATATCAGATCGGGTAA
AATCGGCGATGTGCCGAAACATTTAAAAGACGCCCACTATAAAGGAGCCCAAGAGCTCGGACGCGGAATCGGCTATCAAT
ATCCTCACGATTTCGAAAACGGATGGGTCGAACAGCAATATTTGCCTGAACCGTTAAAAAACAAACAATACTATAAACCG
AAACAAACGGGGAAATTTGAAGCCGCCATAAAGCAAGTGTATGAAAAACTGCTGAAACAGAAAAAATAA

Domains

Predicted by InterProScan.

• MgsA AAA+ ATPase C terminal (MgsA_C) (252-417)

• Holliday junction DNA helicase RuvB P-loop domain (RuvB_N) (8-125)

• AAA C-terminal domain (AAA_assoc_2) (172-251)

3D structure

• AlphaFold DB: A0A9P1NII9

Similar proteins

Only experimentally validated proteins are listed.

Protein	Organism	Identities (%)	Coverage (%)	Ha-value
rarA	Bacillus subtilis subsp. subtilis str. 168	90.736	99.763	0.905