Detailed information    

insolico Bioinformatically predicted

Overview

Name   comF   Type   Machinery gene
Locus tag   PFY12_RS16020 Genome accession   NZ_CP115859
Coordinates   1290547..1290807 (+) Length   86 a.a.
NCBI ID   WP_333780912.1    Uniprot ID   -
Organism   Chryseobacterium camelliae strain VAN22-5A     
Function   ssDNA transport into the cell (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 1285547..1295807
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  PFY12_RS05960 (PFY12_05960) aceB 1286920..1288494 (-) 1575 WP_271149937.1 malate synthase A -
  PFY12_RS05965 (PFY12_05965) - 1288620..1290095 (+) 1476 WP_271149938.1 helix-turn-helix domain-containing protein -
  PFY12_RS16015 - 1290155..1290505 (+) 351 WP_333780911.1 double zinc ribbon domain-containing protein -
  PFY12_RS16020 comF 1290547..1290807 (+) 261 WP_333780912.1 ComF family protein Machinery gene
  PFY12_RS05975 (PFY12_05975) - 1291011..1291697 (+) 687 WP_271149939.1 alpha/beta fold hydrolase -
  PFY12_RS05980 (PFY12_05980) upp 1291699..1292352 (-) 654 WP_271149940.1 uracil phosphoribosyltransferase -
  PFY12_RS05985 (PFY12_05985) der 1292428..1293738 (-) 1311 WP_271149941.1 ribosome biogenesis GTPase Der -
  PFY12_RS05995 (PFY12_05995) - 1294275..1294871 (-) 597 WP_271149942.1 antirestriction protein ArdA -

Sequence

Protein


Download         Length: 86 a.a.        Molecular weight: 9690.11 Da        Isoelectric Point: 6.7213

>NTDB_id=774056 PFY12_RS16020 WP_333780912.1 1290547..1290807(+) (comF) [Chryseobacterium camelliae strain VAN22-5A]
MSKFYNIPFSHDLIKRNHYSKAQALKDKQDRLEAENTFSITQPISGKHILLIDDVFTTGNTLATIAWEILNAGDNKVSVL
VMAIDI

Nucleotide


Download         Length: 261 bp        

>NTDB_id=774056 PFY12_RS16020 WP_333780912.1 1290547..1290807(+) (comF) [Chryseobacterium camelliae strain VAN22-5A]
TTGTCGAAGTTTTATAACATTCCTTTCAGTCACGACTTAATCAAAAGAAATCATTATTCGAAAGCTCAGGCATTGAAAGA
TAAGCAAGACCGCCTGGAAGCGGAAAATACTTTTTCGATCACGCAACCTATTTCAGGGAAACATATTTTATTGATTGATG
ATGTTTTCACCACAGGAAATACTTTAGCGACGATTGCATGGGAAATTCTAAATGCCGGAGACAATAAAGTAAGTGTTCTG
GTGATGGCGATTGATATTTAA

Domains


No domain identified.



Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comF Riemerella anatipestifer ATCC 11845 = DSM 15868

58.824

98.837

0.581