Detailed information    

insolico Bioinformatically predicted

Overview

Name   comF   Type   Machinery gene
Locus tag   PFY09_RS08480 Genome accession   NZ_CP115857
Coordinates   1886105..1886758 (+) Length   217 a.a.
NCBI ID   WP_271162118.1    Uniprot ID   -
Organism   Chryseobacterium gambrini strain PL22-1A     
Function   ssDNA transport into the cell (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 1881105..1891758
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  PFY09_RS08465 (PFY09_08465) aceA 1881336..1882616 (-) 1281 WP_214590747.1 isocitrate lyase -
  PFY09_RS08470 (PFY09_08470) aceB 1882752..1884326 (-) 1575 WP_271162116.1 malate synthase A -
  PFY09_RS08475 (PFY09_08475) - 1884452..1885927 (+) 1476 WP_271162117.1 helix-turn-helix domain-containing protein -
  PFY09_RS08480 (PFY09_08480) comF 1886105..1886758 (+) 654 WP_271162118.1 ComF family protein Machinery gene
  PFY09_RS08485 (PFY09_08485) - 1886798..1887997 (-) 1200 WP_271162119.1 cytochrome-c peroxidase -
  PFY09_RS08490 (PFY09_08490) - 1888085..1889431 (-) 1347 WP_271162120.1 YHYH protein -
  PFY09_RS08495 (PFY09_08495) - 1889498..1890568 (-) 1071 WP_271162121.1 cytochrome-c peroxidase -
  PFY09_RS08500 (PFY09_08500) - 1890590..1891267 (-) 678 WP_271162122.1 MbnP family protein -
  PFY09_RS08505 (PFY09_08505) - 1891264..1891713 (-) 450 WP_271162123.1 Spy/CpxP family protein refolding chaperone -

Sequence

Protein


Download         Length: 217 a.a.        Molecular weight: 25546.50 Da        Isoelectric Point: 8.0742

>NTDB_id=774026 PFY09_RS08480 WP_271162118.1 1886105..1886758(+) (comF) [Chryseobacterium gambrini strain PL22-1A]
MMLDILFPNRCIRCNRIIDADFPVCNLCFDQIHFTHNDYSEHNFVKEKCSLLFPIENAFALMQFEKENVSRKLIHELKYR
NREKIGKILAEWATERLDFQNRKPDLLVTVPLHPRKLKERGYNQLHWFAETLSEFYAIPFDHDVMKRNHYSKAQALKDKQ
NRLKTENTFSMTKNISGKHILLIDDVFTTGNTLASIAWEILKSGDNKVSVLVMAIDE

Nucleotide


Download         Length: 654 bp        

>NTDB_id=774026 PFY09_RS08480 WP_271162118.1 1886105..1886758(+) (comF) [Chryseobacterium gambrini strain PL22-1A]
ATGATGCTCGATATTTTATTTCCGAATCGCTGTATTCGGTGCAACCGGATAATTGATGCCGATTTTCCGGTCTGTAATCT
TTGCTTTGACCAGATTCACTTTACCCACAACGATTATTCTGAACATAATTTTGTTAAAGAAAAATGCAGTCTTCTTTTTC
CTATCGAAAATGCTTTTGCACTCATGCAGTTTGAAAAAGAAAATGTGAGCCGAAAATTAATTCATGAACTGAAGTACCGG
AATCGGGAGAAGATCGGGAAAATTTTAGCTGAATGGGCGACGGAAAGACTGGATTTTCAAAATCGGAAGCCAGATCTTTT
GGTGACGGTTCCACTTCATCCGAGAAAATTAAAAGAAAGAGGATATAACCAACTGCATTGGTTCGCCGAAACGCTTTCAG
AATTTTATGCTATTCCTTTTGATCATGATGTGATGAAAAGAAATCATTATTCCAAAGCTCAGGCTTTGAAGGATAAACAG
AACCGGCTGAAAACTGAAAATACATTTTCAATGACTAAAAATATTTCAGGTAAGCATATTTTGTTAATTGATGATGTTTT
TACAACGGGAAATACGCTGGCTTCAATTGCATGGGAGATTCTGAAATCGGGAGATAATAAAGTGAGTGTTTTGGTTATGG
CAATTGATGAATAA

Domains

Predicted by InterproScan.

Double zinc ribbon domain (DZR_2)

(2-36)

Phosphoribosyl transferase domain (Pribosyltran)

(81-203)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comF Riemerella anatipestifer ATCC 11845 = DSM 15868

51.613

100

0.516