Detailed information    

insolico Bioinformatically predicted

Overview

Name   recD2   Type   Machinery gene
Locus tag   PFY08_RS21670 Genome accession   NZ_CP115856
Coordinates   4234610..4236946 (-) Length   778 a.a.
NCBI ID   WP_098212643.1    Uniprot ID   -
Organism   Bacillus cereus strain PL22-16A     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 4229610..4241946
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  PFY08_RS21645 (PFY08_21645) - 4232255..4232599 (+) 345 WP_000209577.1 PH domain-containing protein -
  PFY08_RS21650 (PFY08_21650) - 4232644..4233711 (-) 1068 WP_000793128.1 AI-2E family transporter -
  PFY08_RS21655 (PFY08_21655) - 4233888..4234100 (+) 213 WP_000242535.1 hypothetical protein -
  PFY08_RS21660 (PFY08_21660) - 4234147..4234275 (-) 129 WP_001053553.1 YrzQ family protein -
  PFY08_RS21665 (PFY08_21665) - 4234294..4234482 (-) 189 WP_000469281.1 hypothetical protein -
  PFY08_RS21670 (PFY08_21670) recD2 4234610..4236946 (-) 2337 WP_098212643.1 ATP-dependent RecD-like DNA helicase Machinery gene
  PFY08_RS21675 (PFY08_21675) - 4237042..4237701 (-) 660 WP_000066409.1 tetratricopeptide repeat protein -
  PFY08_RS21680 (PFY08_21680) mnmA 4237811..4238926 (-) 1116 WP_001038010.1 tRNA 2-thiouridine(34) synthase MnmA -
  PFY08_RS21685 (PFY08_21685) - 4238943..4240088 (-) 1146 WP_000439881.1 cysteine desulfurase family protein -
  PFY08_RS21690 (PFY08_21690) cymR 4240124..4240540 (-) 417 WP_000704116.1 cysteine metabolism transcriptional regulator CymR -

Sequence

Protein


Download         Length: 778 a.a.        Molecular weight: 87493.03 Da        Isoelectric Point: 5.3294

>NTDB_id=774010 PFY08_RS21670 WP_098212643.1 4234610..4236946(-) (recD2) [Bacillus cereus strain PL22-16A]
MGNQHAMDLFEEEKKFIKAQVLHTIFHNEENLYSVVSMKVIETNETYDEKKVMINGHFPRMHEDEVFTLTGHFKDHPKYG
KQYMVETFKKELPQTKAGMVQYLASDLFKGIGKRTAEKIVDHLGEHAISKIMDDPEALNGVVNKQKAQEIYETIVEHQGL
EKVMSFLNGYGFGTKLSIKIYQQYKEMTLEVIRNNPYQLIEEVDGIGFGRADDIGRALGISGNHDDRVRAGCFYTLENVS
LQLGHVYMRKDQLVRETMSLLNNQEGRVTEEDIIGCIETMQSEGKVIIEEERVYLATLFYSEKGVVKSIRRLMNQEETPS
FPEAEVLKTLGEIEEQLNVQYAPFQQEAIQTALHKPMMLLTGGPGTGKTTVIKGIVEMYVSLHGLSLNPNEYSDDNPFPI
LLTAPTGRAAKRMSESTGLPACTIHRLLGWTPEGSFQRNETDPVQGKLLIIDEFSMVDIWLANQLFKSLPTNIQVIVVGD
EDQLPSVGPGQVLKDLLNAGAVPTVKLTEIYRQAEGSSVIQLAHAIKNGTLPPDLAQNKKDRSFISCTGAQIVEVVKKVC
ENAKTKGFSARDVQVLAPMYRGPAGINVLNEALQQVFNPKREKSKEIAYGDVVYRRGDKVLQLVNQPESQVFNGDIGEIV
SVFYAKENVEQQDMIIVSFDGIEVTYTKPDLNQITHAYCCSIHKSQGSEFPIVIMPIVKSYNRMLRRNLIYTGITRSKKF
LIICGEEAAFQSGVNRLDDAMRQTTLASRLQESQGEVQMVTVNGEEMDVENISPYDFM

Nucleotide


Download         Length: 2337 bp        

>NTDB_id=774010 PFY08_RS21670 WP_098212643.1 4234610..4236946(-) (recD2) [Bacillus cereus strain PL22-16A]
ATGGGAAATCAACATGCAATGGATTTGTTTGAGGAAGAGAAAAAGTTTATAAAAGCGCAAGTTCTTCATACCATTTTCCA
CAACGAAGAAAACCTCTATTCCGTTGTCAGTATGAAAGTCATTGAAACGAATGAAACGTATGACGAAAAGAAAGTAATGA
TAAACGGTCATTTTCCCCGCATGCATGAAGATGAAGTGTTTACATTGACAGGTCATTTTAAGGACCATCCAAAGTATGGA
AAACAATATATGGTTGAAACATTTAAAAAAGAATTGCCGCAAACAAAAGCAGGTATGGTGCAATATTTAGCGAGTGATTT
ATTTAAAGGGATAGGAAAACGTACAGCTGAAAAAATTGTGGACCATCTCGGAGAACATGCTATTTCTAAAATTATGGATG
ACCCTGAGGCGTTAAATGGTGTTGTTAATAAACAAAAGGCTCAGGAAATATATGAGACAATTGTTGAACATCAAGGATTA
GAGAAAGTAATGAGCTTTTTAAATGGCTACGGTTTTGGAACGAAACTTTCTATTAAGATTTACCAGCAATATAAAGAGAT
GACATTAGAAGTGATTCGTAATAATCCGTATCAACTTATTGAAGAAGTGGACGGGATTGGTTTTGGAAGAGCGGATGATA
TAGGGCGTGCGTTAGGGATATCGGGTAATCATGACGACCGTGTACGAGCGGGATGTTTTTACACATTAGAGAATGTCTCA
TTACAACTTGGTCATGTTTATATGAGGAAAGATCAACTTGTAAGAGAAACGATGTCACTTTTAAACAATCAAGAAGGAAG
AGTGACTGAGGAAGATATTATAGGTTGTATTGAAACGATGCAAAGTGAAGGGAAAGTCATCATAGAAGAAGAACGAGTGT
ATTTAGCGACGTTATTCTACTCTGAAAAAGGTGTTGTAAAGTCTATTCGCAGGCTTATGAATCAAGAAGAAACACCTTCA
TTTCCAGAAGCGGAAGTGTTAAAAACGTTAGGTGAAATTGAAGAACAACTGAACGTACAATATGCACCGTTTCAGCAAGA
AGCAATTCAAACGGCACTTCATAAACCGATGATGTTATTGACAGGTGGACCAGGAACAGGGAAAACAACAGTTATTAAAG
GGATTGTTGAAATGTATGTGTCACTTCACGGATTATCGTTAAATCCGAATGAATACAGTGATGATAATCCATTTCCAATA
CTATTAACAGCTCCAACAGGAAGAGCAGCGAAGCGGATGAGTGAATCGACAGGACTTCCAGCTTGCACAATTCACCGTTT
ACTTGGTTGGACGCCAGAAGGATCTTTCCAGCGTAATGAAACGGATCCTGTCCAAGGTAAGCTCCTTATTATCGATGAAT
TTTCAATGGTTGATATTTGGCTTGCAAATCAGCTATTTAAGTCGTTGCCGACGAATATTCAAGTTATCGTTGTAGGTGAT
GAAGATCAGTTGCCATCTGTAGGACCTGGACAAGTATTAAAAGATTTATTAAATGCAGGCGCAGTTCCGACAGTGAAGCT
TACTGAAATTTATCGTCAAGCGGAAGGCTCATCAGTGATTCAACTTGCCCATGCGATAAAAAATGGAACTCTACCACCAG
ATTTAGCGCAAAACAAAAAAGATCGTTCGTTTATCAGCTGTACAGGGGCTCAAATTGTTGAGGTTGTGAAAAAAGTTTGC
GAAAATGCTAAAACAAAAGGCTTTAGTGCAAGGGATGTTCAAGTATTAGCACCGATGTACCGCGGGCCTGCTGGTATTAA
TGTATTAAACGAAGCGCTGCAACAAGTATTTAATCCGAAGAGGGAAAAGAGTAAAGAAATTGCTTACGGTGATGTTGTGT
ACCGAAGAGGTGATAAAGTACTGCAACTCGTGAATCAGCCGGAGAGCCAAGTGTTTAATGGTGATATTGGGGAAATTGTT
TCGGTGTTTTATGCAAAAGAAAACGTTGAGCAACAAGATATGATTATCGTTTCATTTGATGGAATTGAGGTAACGTATAC
GAAGCCCGATTTAAATCAAATTACGCATGCATATTGTTGTTCCATTCATAAATCACAAGGTAGTGAATTTCCGATTGTTA
TTATGCCAATCGTGAAAAGTTACAACCGTATGTTACGTCGTAATTTAATTTACACGGGTATTACAAGAAGTAAGAAGTTC
CTTATTATTTGCGGGGAGGAAGCAGCTTTCCAATCTGGTGTAAATCGCCTTGATGATGCAATGCGTCAAACAACTTTAGC
TAGTCGCTTGCAAGAATCACAAGGAGAAGTACAGATGGTCACAGTTAATGGCGAGGAAATGGACGTGGAAAACATTTCAC
CGTATGATTTCATGTAA

Domains

Predicted by InterproScan.

Helix-hairpin-helix containing domain (HHH_RecD2)

(156-247)

UvrD-like helicase C-terminal domain (UvrD_C_2)

(676-724)

ATP-dependent RecD-like DNA helicase SH3 domain (SH3_13)

(589-659)

AAA domain (AAA_30)

(341-548)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  recD2 Bacillus subtilis subsp. subtilis str. 168

57.016

100

0.58