Detailed information    

insolico Bioinformatically predicted

Overview

Name   codY   Type   Regulator
Locus tag   PFY08_RS18815 Genome accession   NZ_CP115856
Coordinates   3714009..3714788 (-) Length   259 a.a.
NCBI ID   WP_000421290.1    Uniprot ID   A0A9W5VKA1
Organism   Bacillus cereus strain PL22-16A     
Function   repression of comK (predicted from homology)   
Competence regulation

Related MGE

Note: This gene co-localizes with putative mobile genetic elements (MGEs) in the genome predicted by VRprofile2, as detailed below.

Gene-MGE association summary

MGE type MGE coordinates Gene coordinates Relative position Distance (bp)
ICE 3688715..3750473 3714009..3714788 within 0


Gene organization within MGE regions


Location: 3688715..3750473
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  PFY08_RS18705 (PFY08_18705) - 3689285..3690184 (-) 900 WP_000868217.1 polysaccharide deacetylase family protein -
  PFY08_RS18710 (PFY08_18710) pnp 3690336..3692474 (-) 2139 WP_000076737.1 polyribonucleotide nucleotidyltransferase -
  PFY08_RS18715 (PFY08_18715) rpsO 3692635..3692904 (-) 270 WP_001229392.1 30S ribosomal protein S15 -
  PFY08_RS18720 (PFY08_18720) ribF 3693005..3693976 (-) 972 WP_000766706.1 bifunctional riboflavin kinase/FAD synthetase -
  PFY08_RS18725 (PFY08_18725) truB 3694020..3694943 (-) 924 WP_000399352.1 tRNA pseudouridine(55) synthase TruB -
  PFY08_RS18730 (PFY08_18730) rbfA 3695030..3695386 (-) 357 WP_000776437.1 30S ribosome-binding factor RbfA -
  PFY08_RS18735 (PFY08_18735) - 3695402..3695683 (-) 282 WP_000582363.1 DUF503 domain-containing protein -
  PFY08_RS18740 (PFY08_18740) infB 3695680..3697740 (-) 2061 WP_000036343.1 translation initiation factor IF-2 -
  PFY08_RS18745 (PFY08_18745) - 3697745..3698056 (-) 312 WP_001286523.1 YlxQ family RNA-binding protein -
  PFY08_RS18750 (PFY08_18750) rnpM 3698057..3698329 (-) 273 WP_000071127.1 RNase P modulator RnpM -
  PFY08_RS18755 (PFY08_18755) nusA 3698341..3699447 (-) 1107 WP_000102604.1 transcription termination factor NusA -
  PFY08_RS18760 (PFY08_18760) rimP 3699465..3699935 (-) 471 WP_000359096.1 ribosome maturation factor RimP -
  PFY08_RS18765 (PFY08_18765) - 3700272..3704573 (-) 4302 WP_000060005.1 PolC-type DNA polymerase III -
  PFY08_RS18770 (PFY08_18770) - 3704698..3706398 (-) 1701 WP_000814299.1 proline--tRNA ligase -
  PFY08_RS18775 (PFY08_18775) rseP 3706508..3707764 (-) 1257 WP_001090243.1 RIP metalloprotease RseP -
  PFY08_RS18780 (PFY08_18780) dxr 3707782..3708924 (-) 1143 WP_000790373.1 1-deoxy-D-xylulose-5-phosphate reductoisomerase -
  PFY08_RS18785 (PFY08_18785) cdsA 3708948..3709739 (-) 792 WP_000813592.1 phosphatidate cytidylyltransferase -
  PFY08_RS18790 (PFY08_18790) uppS 3709757..3710533 (-) 777 WP_000971296.1 isoprenyl transferase -
  PFY08_RS18795 (PFY08_18795) frr 3710619..3711176 (-) 558 WP_000531501.1 ribosome recycling factor -
  PFY08_RS18800 (PFY08_18800) pyrH 3711179..3711901 (-) 723 WP_000042668.1 UMP kinase -
  PFY08_RS18805 (PFY08_18805) tsf 3711968..3712855 (-) 888 WP_001018578.1 translation elongation factor Ts -
  PFY08_RS18810 (PFY08_18810) rpsB 3712959..3713660 (-) 702 WP_000111485.1 30S ribosomal protein S2 -
  PFY08_RS18815 (PFY08_18815) codY 3714009..3714788 (-) 780 WP_000421290.1 GTP-sensing pleiotropic transcriptional regulator CodY Regulator
  PFY08_RS18820 (PFY08_18820) hslU 3714866..3716256 (-) 1391 Protein_3658 ATP-dependent protease ATPase subunit HslU -
  PFY08_RS18825 (PFY08_18825) hslV 3716279..3716821 (-) 543 WP_000526272.1 ATP-dependent protease proteolytic subunit HslV -
  PFY08_RS18830 (PFY08_18830) xerC 3716864..3717763 (-) 900 WP_001101243.1 tyrosine recombinase XerC -
  PFY08_RS18835 (PFY08_18835) trmFO 3717829..3719133 (-) 1305 WP_000213003.1 FADH(2)-oxidizing methylenetetrahydrofolate--tRNA-(uracil(54)-C(5))- methyltransferase TrmFO -
  PFY08_RS18840 (PFY08_18840) topA 3719182..3721260 (-) 2079 WP_001286963.1 type I DNA topoisomerase -
  PFY08_RS18845 (PFY08_18845) dprA 3721405..3722274 (-) 870 WP_000818060.1 DNA-processing protein DprA -
  PFY08_RS18850 (PFY08_18850) sucD 3722363..3723265 (-) 903 WP_000115178.1 succinate--CoA ligase subunit alpha -
  PFY08_RS18855 (PFY08_18855) sucC 3723285..3724445 (-) 1161 WP_001020791.1 ADP-forming succinate--CoA ligase subunit beta -
  PFY08_RS18860 (PFY08_18860) - 3724640..3725413 (-) 774 WP_098212676.1 ribonuclease HII -
  PFY08_RS18865 (PFY08_18865) ylqF 3725470..3726360 (-) 891 WP_098212675.1 ribosome biogenesis GTPase YlqF -
  PFY08_RS18870 (PFY08_18870) lepB 3726381..3726932 (-) 552 WP_000711853.1 signal peptidase I -
  PFY08_RS18875 (PFY08_18875) rplS 3727034..3727378 (-) 345 WP_001186516.1 50S ribosomal protein L19 -
  PFY08_RS18880 (PFY08_18880) trmD 3727525..3728259 (-) 735 WP_000686903.1 tRNA (guanosine(37)-N1)-methyltransferase TrmD -
  PFY08_RS18885 (PFY08_18885) rimM 3728259..3728774 (-) 516 WP_000170278.1 ribosome maturation factor RimM -
  PFY08_RS18890 (PFY08_18890) - 3728896..3729123 (-) 228 WP_000737401.1 KH domain-containing protein -
  PFY08_RS18895 (PFY08_18895) rpsP 3729138..3729410 (-) 273 WP_000268750.1 30S ribosomal protein S16 -
  PFY08_RS18900 (PFY08_18900) ffh 3729512..3730861 (-) 1350 WP_000863460.1 signal recognition particle protein -
  PFY08_RS18905 (PFY08_18905) - 3730874..3731206 (-) 333 WP_000891062.1 putative DNA-binding protein -
  PFY08_RS18910 (PFY08_18910) ftsY 3731340..3732329 (-) 990 WP_000007655.1 signal recognition particle-docking protein FtsY -
  PFY08_RS18915 (PFY08_18915) smc 3732345..3735914 (-) 3570 WP_271143356.1 chromosome segregation protein SMC -
  PFY08_RS18920 (PFY08_18920) rncS 3736061..3736798 (-) 738 WP_001146875.1 ribonuclease III -
  PFY08_RS18925 (PFY08_18925) acpP 3736857..3737090 (-) 234 WP_000786062.1 acyl carrier protein -
  PFY08_RS18930 (PFY08_18930) fabG 3737160..3737900 (-) 741 WP_098212674.1 3-oxoacyl-[acyl-carrier-protein] reductase -
  PFY08_RS18935 (PFY08_18935) fabD 3737900..3738844 (-) 945 WP_000515899.1 ACP S-malonyltransferase -
  PFY08_RS18940 (PFY08_18940) plsX 3738859..3739851 (-) 993 WP_000684100.1 phosphate acyltransferase PlsX -
  PFY08_RS18945 (PFY08_18945) fapR 3739848..3740441 (-) 594 WP_000747348.1 transcription factor FapR -
  PFY08_RS18950 (PFY08_18950) recG 3740530..3742578 (-) 2049 WP_001000816.1 ATP-dependent DNA helicase RecG -
  PFY08_RS18955 (PFY08_18955) - 3742869..3744545 (-) 1677 WP_000027129.1 DAK2 domain-containing protein -
  PFY08_RS18960 (PFY08_18960) - 3744568..3744930 (-) 363 WP_000021109.1 Asp23/Gls24 family envelope stress response protein -
  PFY08_RS18965 (PFY08_18965) rpmB 3745307..3745495 (+) 189 WP_000124776.1 50S ribosomal protein L28 -
  PFY08_RS18970 (PFY08_18970) spoVM 3745569..3745649 (-) 81 WP_001213599.1 stage V sporulation protein SpoVM -
  PFY08_RS18975 (PFY08_18975) - 3745716..3746396 (-) 681 WP_002026234.1 thiamine diphosphokinase -
  PFY08_RS18980 (PFY08_18980) rpe 3746465..3747109 (-) 645 WP_000589974.1 ribulose-phosphate 3-epimerase -
  PFY08_RS18985 (PFY08_18985) rsgA 3747112..3747993 (-) 882 WP_001113932.1 ribosome small subunit-dependent GTPase A -
  PFY08_RS18990 (PFY08_18990) pknB 3748240..3750213 (-) 1974 WP_000904747.1 Stk1 family PASTA domain-containing Ser/Thr kinase -

Sequence

Protein


Download         Length: 259 a.a.        Molecular weight: 28793.05 Da        Isoelectric Point: 4.7165

>NTDB_id=774002 PFY08_RS18815 WP_000421290.1 3714009..3714788(-) (codY) [Bacillus cereus strain PL22-16A]
MELLAKTRKLNALLQSAAGKPVNFREMSDTMCEVIEANVFVVSRRGKLLGYAIHQQIENERMKQMLAERQFPEEYTQSLF
NITETSSNLDVNSAYTAFPVENRELFGQGLTTIVPIVGGGERLGTLVLARLGQEFLDDDLILAEYSSTVVGMEILREKAE
EIEEEARSKAVVQMAISSLSYSELEAIEHIFEELNGTEGLLVASKIADRVGITRSVIVNALRKLESAGVIESRSLGMKGT
YIKVLNDKFLQELAKLKTN

Nucleotide


Download         Length: 780 bp        

>NTDB_id=774002 PFY08_RS18815 WP_000421290.1 3714009..3714788(-) (codY) [Bacillus cereus strain PL22-16A]
ATGGAATTATTAGCAAAAACGAGAAAATTAAATGCGTTATTACAGAGCGCAGCAGGGAAGCCTGTAAACTTTAGAGAAAT
GTCTGACACAATGTGTGAAGTAATCGAAGCAAACGTATTCGTAGTTAGCCGTCGTGGTAAATTACTAGGTTATGCAATTC
ACCAACAAATCGAAAACGAACGCATGAAGCAAATGCTTGCAGAACGTCAATTCCCAGAAGAATATACACAAAGCTTATTC
AACATTACAGAAACATCTTCAAACTTAGATGTGAACAGTGCTTACACAGCATTCCCAGTAGAAAACAGAGAATTATTCGG
TCAAGGTTTAACTACAATCGTACCAATCGTTGGTGGCGGTGAGCGTCTAGGTACATTAGTATTAGCTCGTCTTGGTCAAG
AGTTCTTAGATGATGATTTAATCCTTGCTGAGTACAGCTCAACTGTTGTAGGTATGGAAATCTTACGTGAAAAAGCAGAA
GAAATCGAAGAGGAAGCGCGTAGTAAAGCTGTTGTTCAAATGGCAATCAGCTCATTATCTTACAGTGAGTTAGAAGCAAT
TGAGCATATCTTCGAAGAATTAAATGGAACAGAAGGTTTACTTGTTGCAAGTAAAATTGCTGATCGCGTAGGAATTACTC
GCTCTGTAATCGTAAATGCACTACGTAAATTAGAAAGTGCTGGTGTTATTGAGTCTCGCTCTTTAGGTATGAAAGGAACA
TACATTAAAGTGCTAAACGACAAGTTTCTACAAGAACTTGCTAAATTAAAAACAAACTAA

Domains

Predicted by InterproScan.

CodY GAF-like domain (CodY)

(2-178)

CodY helix-turn-helix domain (HTH_CodY)

(198-255)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  codY Bacillus subtilis subsp. subtilis str. 168

81.467

100

0.815
  codY Lactococcus lactis subsp. lactis strain DGCC12653

46.667

98.456

0.459