Detailed information    

insolico Bioinformatically predicted

Overview

Name   mutS/mutS2   Type   Machinery gene
Locus tag   QTN45_RS06420 Genome accession   NZ_CP128500
Coordinates   1235509..1237866 (+) Length   785 a.a.
NCBI ID   WP_061573714.1    Uniprot ID   -
Organism   Bacillus amyloliquefaciens strain SRCM123364     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 1230509..1242866
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  QTN45_RS06400 (QTN45_06400) rnhC 1231797..1232738 (-) 942 WP_013353114.1 ribonuclease HIII -
  QTN45_RS06405 (QTN45_06405) zapA 1232872..1233129 (+) 258 WP_003152533.1 cell division protein ZapA -
  QTN45_RS06410 (QTN45_06410) - 1233137..1233670 (+) 534 WP_013353113.1 CvpA family protein -
  QTN45_RS06415 (QTN45_06415) polX 1233776..1235488 (+) 1713 WP_038463272.1 DNA polymerase/3'-5' exonuclease PolX -
  QTN45_RS06420 (QTN45_06420) mutS/mutS2 1235509..1237866 (+) 2358 WP_061573714.1 endonuclease MutS2 Machinery gene
  QTN45_RS06425 (QTN45_06425) - 1237883..1238287 (+) 405 WP_003152541.1 DUF350 domain-containing protein -
  QTN45_RS06430 (QTN45_06430) - 1238426..1239103 (-) 678 WP_041481662.1 DUF2711 family protein -
  QTN45_RS06435 (QTN45_06435) - 1239209..1240897 (+) 1689 WP_013353109.1 AMP-binding protein -
  QTN45_RS06440 (QTN45_06440) - 1240988..1241572 (+) 585 WP_014470798.1 TetR/AcrR family transcriptional regulator -
  QTN45_RS06445 (QTN45_06445) - 1241586..1242365 (+) 780 WP_013353107.1 enoyl-CoA hydratase -

Sequence

Protein


Download         Length: 785 a.a.        Molecular weight: 87412.79 Da        Isoelectric Point: 6.3886

>NTDB_id=773858 QTN45_RS06420 WP_061573714.1 1235509..1237866(+) (mutS/mutS2) [Bacillus amyloliquefaciens strain SRCM123364]
MQQKVLSSLEFHKVKEQITAHAASSLGREKLLQLKPLTDLADIQKQLDEVEEASAIMRLRGHAPFGGLTDIRSALRRAEI
GSVLTPAEFTELSGLLYAVKQMKHFISQMTEDGVSIPLIQAHAEELITLGDLEREINSCIDDHGEVLDHASPALRGIRTQ
LRTLESRVRDRLESMLRSSSASKMLSDTIVTIRNDRFVIPVKQEYRSSYGGIVHDTSSSGATLFIEPQAIVDMNNSLQQA
KVKEKQEIERILRMLTEHTAEHTQEIVQNVEVLQTLDFIFAKARYAKAMKATKPFMNGDGFIRLKKARHPLLPQDQVVAN
DIELGGDYTTIVITGPNTGGKTVTLKTLGLLTIMAQAGLHIPADEGSEAAVFDHVFADIGDEQSIEQSLSTFSSHMVNIV
SILKDVSENSLVLFDELGAGTDPQEGAALAMSILDEVHRTNARVLATTHYPELKAYGYNRQGVMNASVEFDIETLSPTYK
LLIGVPGRSNAFEISRRLGLPEHIIGQAKSEMTAEHNEVDLMIASLEKSKKRADEELSETESIRKEAEKLHKELQQQIIE
LNAQKDKLMEEAEQKAAEKLEDAAKEAEQIIRELRSIKQEHRSFKEHELIDAKKRLGDAMPAFEKSKQPERKTEKKRELK
PGDEVKVLTFGQKGALLEKTGEKEWNVQIGILKMKVKEKDLEFLKSAPEPKKEKAITAVKGKDYHVSLELDLRGERYENA
LSRVEKYLDDAVLAGYPRVSIIHGKGTGALRKGVQDLLKNHRSVKSSRFGEAGEGGSGVTIVELK

Nucleotide


Download         Length: 2358 bp        

>NTDB_id=773858 QTN45_RS06420 WP_061573714.1 1235509..1237866(+) (mutS/mutS2) [Bacillus amyloliquefaciens strain SRCM123364]
GTGCAGCAAAAAGTGTTATCATCACTTGAATTTCATAAAGTAAAAGAACAGATTACCGCACATGCCGCCTCATCGCTCGG
CCGGGAAAAGCTTCTGCAGCTGAAGCCTTTGACTGATCTCGCCGACATCCAAAAACAGCTGGATGAAGTCGAAGAAGCAT
CCGCGATCATGCGCTTAAGAGGCCATGCTCCGTTCGGCGGTCTGACCGATATAAGATCGGCTTTGCGTCGGGCGGAAATC
GGCAGCGTGCTGACCCCGGCGGAATTCACCGAATTGTCCGGGCTGCTGTATGCCGTTAAGCAAATGAAGCACTTTATCAG
TCAAATGACAGAAGACGGCGTCAGCATTCCGCTGATCCAGGCCCATGCAGAAGAGCTGATTACATTGGGCGATTTGGAAA
GGGAGATTAATTCCTGCATTGATGATCACGGCGAAGTGCTTGATCATGCATCTCCCGCTTTAAGAGGAATCCGCACGCAG
CTCAGAACGCTTGAATCAAGAGTGAGAGACCGGCTTGAATCGATGCTGCGTTCATCTTCCGCTTCAAAAATGCTGTCTGA
CACGATCGTTACGATTCGGAATGACCGCTTTGTCATTCCGGTCAAACAGGAATACAGATCAAGCTACGGCGGGATCGTGC
ATGATACTTCTTCATCAGGTGCGACGCTGTTTATTGAACCGCAGGCGATCGTCGATATGAACAACTCGCTTCAGCAGGCG
AAGGTGAAAGAAAAACAGGAAATCGAACGGATTCTCCGGATGCTGACGGAGCATACGGCTGAACACACACAAGAGATTGT
TCAAAATGTGGAAGTGCTGCAGACGCTGGATTTCATTTTCGCAAAAGCGAGATACGCAAAAGCGATGAAGGCGACAAAAC
CGTTTATGAACGGAGACGGCTTTATCCGTCTGAAAAAAGCGCGCCATCCGCTGCTGCCTCAAGATCAAGTCGTGGCCAAC
GACATTGAACTGGGCGGAGATTATACGACGATCGTTATCACGGGTCCGAATACGGGCGGTAAAACCGTTACGTTAAAAAC
GCTCGGGCTGCTGACGATAATGGCGCAGGCAGGACTGCACATACCGGCTGATGAAGGATCGGAAGCCGCCGTATTTGATC
ATGTTTTTGCCGATATCGGTGATGAACAGTCGATCGAACAAAGCCTGAGTACGTTCTCATCCCACATGGTCAATATCGTC
AGTATTTTAAAAGACGTGTCCGAAAACAGTCTTGTGCTGTTTGATGAACTCGGTGCCGGAACAGACCCGCAGGAAGGGGC
GGCGCTTGCCATGAGCATTCTTGACGAAGTCCACCGCACAAACGCCAGAGTGCTTGCGACAACCCATTATCCGGAGCTGA
AAGCATACGGTTATAACAGACAAGGCGTCATGAATGCAAGCGTTGAATTTGATATTGAAACGCTTTCGCCGACCTACAAG
CTCCTGATCGGAGTGCCGGGCCGAAGCAACGCTTTTGAAATCTCAAGACGCCTCGGCCTGCCGGAGCATATCATCGGCCA
GGCGAAGTCAGAAATGACCGCCGAACACAATGAAGTCGATCTGATGATCGCGTCACTTGAAAAAAGTAAAAAAAGAGCGG
ATGAAGAGCTTTCTGAAACCGAATCAATCCGAAAAGAAGCAGAAAAACTGCATAAAGAGCTGCAGCAGCAAATCATTGAG
CTGAATGCTCAGAAAGACAAACTGATGGAAGAAGCCGAACAAAAAGCAGCGGAAAAACTGGAAGACGCCGCAAAAGAAGC
GGAACAGATCATTCGCGAGCTCCGGTCTATCAAGCAAGAACACAGATCCTTTAAGGAACACGAGCTGATTGATGCCAAAA
AACGTCTCGGAGACGCGATGCCGGCTTTTGAAAAATCAAAGCAGCCGGAAAGAAAAACAGAGAAAAAACGCGAGCTGAAG
CCGGGTGACGAAGTAAAGGTGCTCACATTCGGACAAAAAGGGGCGCTGCTTGAAAAAACCGGCGAGAAAGAATGGAATGT
CCAAATCGGCATCCTTAAAATGAAGGTGAAGGAAAAAGATCTTGAGTTTCTCAAGTCCGCTCCTGAACCGAAAAAAGAAA
AAGCCATCACCGCCGTAAAAGGGAAGGATTATCACGTGTCCCTTGAACTTGACCTGCGGGGAGAGCGTTACGAAAATGCC
CTCAGCCGCGTCGAAAAGTATTTAGATGACGCGGTGCTTGCCGGCTATCCGAGAGTGTCCATCATTCACGGAAAAGGCAC
GGGCGCCCTCCGAAAAGGGGTGCAGGATCTTCTGAAAAACCACCGCAGCGTAAAAAGCTCGCGGTTCGGGGAAGCGGGAG
AAGGAGGATCAGGCGTAACGATTGTCGAACTAAAATAA

Domains

Predicted by InterProScan.

MutS2 and Smr-associated SH3 domain (MSSS)

(641-681)

Smr domain (Smr)

(710-785)

MutS domain V (MutS_V)

(331-512)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  mutS/mutS2 Bacillus subtilis subsp. subtilis str. 168

87.643

100

0.876