Detailed information NTG0773858

Bioinformatically predicted

Overview

• Name: pilU
• Type: Machinery gene
• Locus tag: PGN41_RS11240
• Genome accession: NZ_CP115820
• Coordinates: 2415704..2416921 (+)
• Length: 405 a.a.
• NCBI ID: WP_271105711.1
• Uniprot ID: -
• Organism: Pseudomonas tohonis strain Q4-3
• Function: assembly of type IV pilus (predicted from homology) DNA binding and uptake

Genomic Context

Location: 2410704..2421921

Locus tag	Gene name	Coordinates (strand)	Size (bp)	Protein ID	Product	Description
PGN41_RS11215	-	2411136..2411636 (+)	501	WP_263153801.1	DUF3291 domain-containing protein	-
PGN41_RS11220	-	2411659..2412876 (+)	1218	WP_271105710.1	winged helix-turn-helix domain-containing protein	-
PGN41_RS11225	-	2413167..2414756 (+)	1590	WP_173180316.1	ABC-F family ATPase	-
PGN41_RS11230	-	2414949..2415215 (+)	267	WP_263153804.1	hypothetical protein	-
PGN41_RS11235	-	2415283..2415561 (-)	279	WP_044409048.1	peptidylprolyl isomerase	-
PGN41_RS11240	pilU	2415704..2416921 (+)	1218	WP_271105711.1	PilT/PilU family type 4a pilus ATPase	Machinery gene
PGN41_RS11245	-	2416955..2417713 (-)	759	WP_271105712.1	substrate-binding periplasmic protein	-
PGN41_RS11250	-	2417789..2418760 (-)	972	WP_271105713.1	DUF4431 domain-containing protein	-
PGN41_RS11255	-	2418918..2420873 (-)	1956	WP_271105714.1	acetoacetate--CoA ligase	-
PGN41_RS11260	-	2420981..2421895 (-)	915	WP_271105715.1	LysR family transcriptional regulator	-

Sequence

Protein

• Length: 405 a.a.
• Molecular weight: 44712.10 Da
• Isoelectric Point: 6.4288

>NTDB_id=773858 PGN41_RS11240 WP_271105711.1 2415704..2416921(+) (pilU) [Pseudomonas tohonis strain Q4-3]
MDLPSMLKVLASQDGSDLYLSTGAPPCAKFNGVLKPLGTDPLKPGDVARIAESIMDPEQRGEFDRELEMNLAISLPNIGR
FRINIFKQRNEVSIVARNIKLDIPKFEDLKLPEVLLKVVMEKRGLVLFVGGTGSGKSTSLAALIDYRNRNSGGHIITIED
PVEYVHRHKKSIINQREVGVDTRSFHAALKNTLRQAPDVILIGEIRDRETMEHGLAFADTGHLAISTLHANNANQALDRI
INFFPEERRPQLLNDLGNNLKAFVSQRLVRTSDGKRRAAVEVLLGTATISDLIKRGDFSSIKEIMEKSKALGMQTFDQAL
FDLVVEGSIQEEEAIKNADSANNLRLKLKLHRDGPGTRPTAVPTPPPAPTPQATPTQDAASWGLELKLEELPEDEPPPED
PGKHY

Nucleotide

• Length: 1218 bp

>NTDB_id=773858 PGN41_RS11240 WP_271105711.1 2415704..2416921(+) (pilU) [Pseudomonas tohonis strain Q4-3]
ATGGATCTCCCCTCGATGCTCAAGGTTCTGGCCTCCCAGGATGGCTCGGACCTCTACCTGTCCACCGGTGCGCCGCCCTG
CGCCAAGTTCAACGGCGTGCTCAAGCCGCTGGGCACCGACCCGCTCAAGCCGGGCGACGTGGCGCGTATCGCCGAATCCA
TCATGGACCCGGAGCAGCGCGGCGAATTCGACCGCGAGCTGGAGATGAACCTGGCCATCTCCCTGCCCAACATCGGCCGC
TTCCGCATCAACATCTTCAAGCAGCGCAACGAGGTCTCCATCGTCGCGCGCAACATCAAGCTGGATATCCCGAAGTTCGA
GGACCTCAAGCTCCCCGAGGTGCTGCTCAAGGTGGTGATGGAAAAACGCGGCCTGGTGCTCTTCGTCGGCGGCACCGGCT
CGGGCAAGTCCACCTCCCTGGCCGCGCTGATCGACTACCGCAACCGCAACAGCGGCGGGCACATCATCACCATCGAGGAC
CCGGTGGAGTACGTGCACCGGCACAAGAAATCCATCATCAACCAGCGTGAGGTGGGGGTGGACACCCGCAGCTTCCACGC
CGCCCTGAAGAACACCCTGCGCCAGGCGCCGGACGTGATCCTGATCGGCGAGATCCGCGACCGCGAGACCATGGAACACG
GCCTGGCCTTCGCCGACACCGGCCACCTGGCCATCTCCACCCTGCACGCCAACAACGCCAACCAGGCGCTGGACCGCATC
ATTAACTTCTTCCCCGAGGAACGCCGGCCGCAGCTGCTCAACGACCTGGGCAACAACCTCAAGGCCTTCGTCTCCCAGCG
CCTGGTGCGCACCTCCGACGGCAAGCGCCGCGCGGCGGTGGAAGTGCTGCTGGGCACCGCCACCATCAGCGACCTGATCA
AGCGCGGCGACTTCAGCTCGATCAAGGAAATCATGGAGAAGTCCAAGGCCCTGGGCATGCAGACCTTCGACCAGGCGCTG
TTCGACCTGGTGGTGGAGGGCTCGATCCAGGAAGAGGAAGCGATCAAGAACGCCGACTCGGCCAACAACCTGCGCCTCAA
GCTCAAGCTGCACCGTGACGGTCCCGGCACCCGGCCCACCGCCGTACCCACCCCGCCCCCCGCACCGACGCCCCAGGCCA
CCCCGACCCAGGACGCCGCCAGCTGGGGCCTGGAGCTCAAGCTCGAAGAACTGCCCGAGGACGAGCCGCCGCCGGAAGAC
CCGGGCAAGCACTACTGA

Domains

Predicted by InterproScan.

• Type II/IV secretion system protein (T2SSE) (111-271)

Similar proteins

Only experimentally validated proteins are listed.

Protein	Organism	Identities (%)	Coverage (%)	Ha-value
pilU	Pseudomonas stutzeri DSM 10701	55.372	89.63	0.496
pilU	Acinetobacter baylyi ADP1	52.841	86.914	0.459
pilU	Vibrio cholerae strain A1552	51.558	87.16	0.449
pilT	Deinococcus radiodurans R1 = ATCC 13939 = DSM 20539	38.182	95.062	0.363