Detailed information    

insolico Bioinformatically predicted

Overview

Name   amiE   Type   Regulator
Locus tag   QR290_RS03210 Genome accession   NZ_CP128260
Coordinates   702209..702943 (+) Length   244 a.a.
NCBI ID   WP_064592877.1    Uniprot ID   -
Organism   Pseudomonas fluorescens strain PH.SM     
Function   internalize XIP (predicted from homology)   
Competence regulation

Genomic Context

Location: 697209..707943
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  QR290_RS03195 (QR290_03195) mdoH 697366..699936 (+) 2571 WP_289204323.1 glucans biosynthesis glucosyltransferase MdoH -
  QR290_RS03200 (QR290_03200) - 700318..701115 (+) 798 WP_039772466.1 transporter substrate-binding domain-containing protein -
  QR290_RS03205 (QR290_03205) - 701257..702216 (+) 960 WP_007952431.1 amino acid ABC transporter permease -
  QR290_RS03210 (QR290_03210) amiE 702209..702943 (+) 735 WP_064592877.1 amino acid ABC transporter ATP-binding protein Regulator
  QR290_RS03215 (QR290_03215) - 702997..704913 (-) 1917 WP_115076247.1 methyl-accepting chemotaxis protein -
  QR290_RS03220 (QR290_03220) - 705012..705719 (-) 708 WP_289204324.1 16S rRNA (uracil(1498)-N(3))-methyltransferase -
  QR290_RS03225 (QR290_03225) tatC 705716..706504 (-) 789 WP_279309681.1 twin-arginine translocase subunit TatC -
  QR290_RS03230 (QR290_03230) tatB 706501..706947 (-) 447 WP_115076249.1 Sec-independent protein translocase protein TatB -
  QR290_RS03235 (QR290_03235) - 706958..707236 (-) 279 WP_007952423.1 twin-arginine translocase TatA/TatE family subunit -
  QR290_RS03240 (QR290_03240) - 707262..707594 (-) 333 WP_007952422.1 phosphoribosyl-ATP diphosphatase -

Sequence

Protein


Download         Length: 244 a.a.        Molecular weight: 26866.04 Da        Isoelectric Point: 5.7488

>NTDB_id=773405 QR290_RS03210 WP_064592877.1 702209..702943(+) (amiE) [Pseudomonas fluorescens strain PH.SM]
MIEVRDLVKVFDTRGQVVRAVDNVSTSVAKGEVLVVIGPSGSGKSTFLRCLNGLEEFDSGSVSIDGLQLADPKTDVNAYR
REVGMVFQHFNLFPHMTVLENLCLAQKVVRKRGQKESEAKALALLEKVGIAQKAREYPSRLSGGQQQRVAIARALAMDPK
VMLFDEPTSALDPEMVGEVLDVMKNLAVEGMTMVCVTHEMGFAREVADRVLFFDHGKLLEDASPAEFFDAPKDPRAQAFL
RQVL

Nucleotide


Download         Length: 735 bp        

>NTDB_id=773405 QR290_RS03210 WP_064592877.1 702209..702943(+) (amiE) [Pseudomonas fluorescens strain PH.SM]
GTGATTGAAGTCCGCGATCTGGTAAAAGTCTTCGACACCCGTGGGCAAGTGGTGCGCGCTGTGGATAACGTCAGCACGTC
CGTCGCCAAGGGTGAAGTGCTGGTGGTGATCGGCCCGTCCGGTTCCGGCAAGTCGACCTTCCTGCGTTGCCTCAATGGTC
TGGAAGAATTCGATTCCGGCTCGGTGAGCATCGACGGCCTGCAACTGGCCGACCCGAAAACCGACGTCAACGCCTACCGC
CGCGAAGTCGGCATGGTGTTCCAGCATTTCAATCTGTTCCCGCACATGACCGTGCTGGAGAACCTGTGCCTGGCGCAGAA
AGTCGTGCGCAAGCGCGGCCAGAAGGAAAGCGAAGCCAAGGCTTTGGCGTTGCTGGAGAAGGTCGGCATCGCCCAGAAGG
CCCGCGAATATCCGTCGCGCCTGTCCGGCGGTCAGCAGCAGCGCGTGGCGATTGCCCGGGCGCTGGCGATGGACCCCAAG
GTCATGCTGTTCGACGAGCCAACCTCGGCCCTCGACCCGGAAATGGTCGGTGAAGTGCTGGACGTGATGAAGAACCTGGC
CGTGGAAGGCATGACCATGGTCTGCGTGACCCACGAAATGGGTTTTGCCCGGGAAGTGGCGGATCGGGTGCTGTTCTTCG
ATCACGGCAAACTGCTGGAAGACGCCTCGCCGGCAGAGTTCTTCGACGCACCGAAGGATCCGCGAGCTCAGGCGTTCCTG
CGGCAAGTCCTCTAA

Domains

Predicted by InterProScan.

ABC transporter (ABC_tran)

(21-169)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  amiE Streptococcus thermophilus LMG 18311

34.109

100

0.361
  amiE Streptococcus thermophilus LMD-9

34.109

100

0.361