Detailed information    

insolico Bioinformatically predicted

Overview

Name   amiE   Type   Regulator
Locus tag   QRX22_RS01295 Genome accession   NZ_CP128255
Coordinates   277865..278629 (-) Length   254 a.a.
NCBI ID   WP_001136232.1    Uniprot ID   Q0TBX9
Organism   Escherichia coli strain T309.Ta3     
Function   internalize XIP (predicted from homology)   
Competence regulation

Genomic Context

Location: 272865..283629
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  QRX22_RS01265 (QRX22_01265) - 273499..274857 (-) 1359 WP_001306345.1 PTS galactitol transporter subunit IIC -
  QRX22_RS01270 (QRX22_01270) - 274934..275215 (-) 282 WP_000084021.1 PTS sugar transporter subunit IIB -
  QRX22_RS01275 (QRX22_01275) - 275212..275685 (-) 474 WP_021531666.1 PTS sugar transporter subunit IIA -
  QRX22_RS01280 (QRX22_01280) - 275710..276456 (-) 747 WP_001304937.1 GntR family transcriptional regulator -
  QRX22_RS01285 (QRX22_01285) nikR 276655..277056 (-) 402 WP_001190062.1 nickel-responsive transcriptional regulator NikR -
  QRX22_RS01290 (QRX22_01290) nikE 277062..277868 (-) 807 WP_000173679.1 nickel import ATP-binding protein NikE -
  QRX22_RS01295 (QRX22_01295) amiE 277865..278629 (-) 765 WP_001136232.1 nickel import ATP-binding protein NikD Regulator
  QRX22_RS01300 (QRX22_01300) nikC 278629..279462 (-) 834 WP_001008954.1 nickel ABC transporter permease subunit NikC -
  QRX22_RS01305 (QRX22_01305) nikB 279459..280403 (-) 945 WP_000947070.1 nickel ABC transporter permease subunit NikB -
  QRX22_RS01310 (QRX22_01310) nikA 280403..281977 (-) 1575 WP_021567040.1 nickel ABC transporter substrate-binding protein -
  QRX22_RS01315 (QRX22_01315) acpT 282088..282675 (-) 588 WP_000285789.1 4'-phosphopantetheinyl transferase AcpT -

Sequence

Protein


Download         Length: 254 a.a.        Molecular weight: 26812.40 Da        Isoelectric Point: 6.6882

>NTDB_id=773309 QRX22_RS01295 WP_001136232.1 277865..278629(-) (amiE) [Escherichia coli strain T309.Ta3]
MPQQIELRNIALQAAQPLVHGVSLTLQRGRVLALVGGSGSGKSLTCAATLGILPAGVRQTAGEILADGKPVSPCALRGIK
IATIMQNPRSAFNPLHTMHTHARETCLALGKPADDATLTAAIEAVGLENAARVLKLYPFEMSGGMLQRMMIAMAVLCESP
FIIADEPTTDLDVVAQARILDLLESIMQKQAPGMLLVTHDMGVVARLADDVAVMSHGKIVEQGDVETLFNAPKHAVTRSL
VSAHLALYGMELAS

Nucleotide


Download         Length: 765 bp        

>NTDB_id=773309 QRX22_RS01295 WP_001136232.1 277865..278629(-) (amiE) [Escherichia coli strain T309.Ta3]
ATGCCACAACAGATTGAACTCCGTAATATCGCGCTACAGGCCGCGCAGCCGCTGGTGCACGGCGTATCGTTAACCCTGCA
ACGTGGGCGTGTGCTGGCGTTAGTCGGCGGTAGTGGCAGCGGGAAGTCGCTGACCTGCGCCGCGACGCTGGGCATTCTGC
CTGCTGGCGTTCGCCAGACGGCGGGGGAAATTTTGGCCGATGGAAAACCGGTTTCTCCCTGCGCCCTGCGCGGCATCAAA
ATTGCCACCATCATGCAGAACCCGCGCAGTGCCTTTAATCCGCTGCACACCATGCACACCCACGCGCGTGAAACCTGCCT
GGCGCTGGGGAAACCCGCCGATGACGCTACGCTTACCGCTGCCATAGAAGCGGTGGGGCTGGAAAACGCCGCGCGCGTGC
TGAAGCTCTACCCGTTCGAGATGAGCGGCGGCATGTTGCAGCGCATGATGATTGCGATGGCGGTGCTGTGCGAATCACCG
TTTATCATCGCCGATGAACCAACCACCGATCTCGACGTGGTAGCACAGGCGCGCATCCTCGATCTGCTGGAAAGCATTAT
GCAAAAACAAGCACCGGGAATGCTGCTGGTTACCCATGATATGGGCGTGGTAGCGCGTCTGGCAGACGATGTGGCGGTAA
TGTCTCACGGTAAGATTGTTGAACAGGGCGATGTAGAAACGCTGTTTAACGCCCCCAAACATGCGGTAACGCGCAGCCTG
GTTTCCGCTCATCTCGCCCTCTACGGTATGGAGCTGGCATCATGA

Domains

Predicted by InterProScan.

ABC transporter (ABC_tran)

(20-168)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB Q0TBX9

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  amiE Streptococcus thermophilus LMG 18311

41.6

98.425

0.409
  amiE Streptococcus thermophilus LMD-9

41.6

98.425

0.409
  amiE Streptococcus salivarius strain HSISS4

40.4

98.425

0.398