Detailed information    

insolico Bioinformatically predicted

Overview

Name   amiE   Type   Regulator
Locus tag   QSI84_RS15985 Genome accession   NZ_CP128218
Coordinates   3238548..3239312 (+) Length   254 a.a.
NCBI ID   WP_001136229.1    Uniprot ID   B7L5T2
Organism   Escherichia coli strain TG1     
Function   internalize XIP (predicted from homology)   
Competence regulation

Genomic Context

Location: 3233548..3244312
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  QSI84_RS15965 (QSI84_15965) acpT 3234502..3235089 (+) 588 WP_000285774.1 4'-phosphopantetheinyl transferase AcpT -
  QSI84_RS15970 (QSI84_15970) nikA 3235200..3236774 (+) 1575 WP_000953361.1 nickel ABC transporter substrate-binding protein -
  QSI84_RS15975 (QSI84_15975) nikB 3236774..3237718 (+) 945 WP_000947068.1 nickel ABC transporter permease subunit NikB -
  QSI84_RS15980 (QSI84_15980) nikC 3237715..3238548 (+) 834 WP_001008963.1 nickel ABC transporter permease subunit NikC -
  QSI84_RS15985 (QSI84_15985) amiE 3238548..3239312 (+) 765 WP_001136229.1 nickel import ATP-binding protein NikD Regulator
  QSI84_RS15990 (QSI84_15990) nikE 3239309..3240115 (+) 807 WP_000173631.1 nickel import ATP-binding protein NikE -
  QSI84_RS15995 (QSI84_15995) nikR 3240121..3240522 (+) 402 WP_001190062.1 nickel-responsive transcriptional regulator NikR -

Sequence

Protein


Download         Length: 254 a.a.        Molecular weight: 26820.38 Da        Isoelectric Point: 6.3761

>NTDB_id=773277 QSI84_RS15985 WP_001136229.1 3238548..3239312(+) (amiE) [Escherichia coli strain TG1]
MPQQIELRNIALQAAQPLVHGVSLTLQRGRVLALVGGSGSGKSLTCAATLGILPAGVRQTAGEILADGKPVSPCALRGIK
IATIMQNPRSAFNPLHTMHTHARETCLALGKPADDATLTAAIEAVGLENAARVLKLYPFEMSGGMLQRMMIAMAVLCESP
FIIADEPTTDLDVVAQARILDLLESIMQKQAPGMLLVTHDMGVVARLADDVAVMSDGKIVEQGDVETLFNAPKHTVTRSL
VSAHLALYGMELAS

Nucleotide


Download         Length: 765 bp        

>NTDB_id=773277 QSI84_RS15985 WP_001136229.1 3238548..3239312(+) (amiE) [Escherichia coli strain TG1]
ATGCCGCAACAGATTGAACTACGTAATATCGCGCTACAGGCCGCGCAGCCGCTGGTACACGGTGTATCGTTAACCCTGCA
ACGCGGGCGCGTGCTGGCGTTAGTCGGCGGTAGCGGCAGCGGGAAATCATTAACCTGCGCCGCAACGCTGGGCATTTTGC
CCGCTGGCGTTCGCCAGACGGCGGGGGAAATTTTAGCCGATGGCAAACCGGTTTCGCCTTGCGCCCTGCGCGGCATCAAA
ATTGCCACCATCATGCAGAACCCGCGCAGCGCCTTTAATCCACTGCACACCATGCACACCCACGCGCGGGAAACCTGCCT
GGCGTTAGGGAAACCCGCCGATGACGCTACGCTTACCGCTGCCATAGAAGCGGTGGGGCTGGAAAACGCCGCGCGCGTGC
TGAAGCTGTACCCGTTCGAGATGAGCGGCGGCATGTTGCAGCGCATGATGATTGCGATGGCGGTGCTGTGTGAATCACCG
TTTATCATCGCCGATGAACCGACCACCGACCTTGACGTGGTAGCACAGGCGCGCATCCTCGATCTGCTGGAAAGCATTAT
GCAAAAACAAGCGCCGGGAATGCTGCTGGTGACCCATGATATGGGCGTTGTGGCGCGTCTGGCGGATGACGTGGCGGTGA
TGTCTGACGGTAAGATTGTCGAACAGGGCGATGTAGAAACGCTGTTTAACGCCCCCAAACATACAGTGACGCGCAGCCTG
GTTTCCGCTCATCTCGCCCTCTACGGTATGGAGCTGGCATCATGA

Domains

Predicted by InterProScan.

ABC transporter (ABC_tran)

(20-168)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB B7L5T2

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  amiE Streptococcus thermophilus LMG 18311

41.6

98.425

0.409
  amiE Streptococcus thermophilus LMD-9

41.6

98.425

0.409
  amiE Streptococcus salivarius strain HSISS4

40.4

98.425

0.398