Detailed information NTG0773232

Bioinformatically predicted

Overview

• Name: xcpW
• Type: Machinery gene
• Locus tag: PF555_RS08970
• Genome accession: NZ_CP115645
• Coordinates: 1918232..1918933 (-)
• Length: 233 a.a.
• NCBI ID: WP_000594572.1
• Uniprot ID: A0A009IN88
• Organism: Acinetobacter baumannii strain 2022CK-00371
• Function: pseudopilus assembly (predicted from homology) DNA binding and uptake

Genomic Context

Location: 1913232..1923933

Locus tag	Gene name	Coordinates (strand)	Size (bp)	Protein ID	Product	Description
PF555_RS08940 (PF555_08940)	-	1913539..1913982 (-)	444	WP_001246676.1	SRPBCC family protein	-
PF555_RS08945 (PF555_08945)	tadA	1914052..1914555 (-)	504	WP_001997771.1	tRNA adenosine(34) deaminase TadA	-
PF555_RS08950 (PF555_08950)	-	1914562..1915686 (-)	1125	WP_001983908.1	enoyl-CoA hydratase/isomerase family protein	-
PF555_RS08955 (PF555_08955)	ung	1915683..1916396 (-)	714	WP_001177528.1	uracil-DNA glycosylase	-
PF555_RS08960 (PF555_08960)	-	1916447..1917043 (-)	597	WP_000908453.1	6-carboxytetrahydropterin synthase	-
PF555_RS08965 (PF555_08965)	gspK	1917273..1918232 (-)	960	WP_000301463.1	type II secretion system minor pseudopilin GspK	-
PF555_RS08970 (PF555_08970)	xcpW	1918232..1918933 (-)	702	WP_000594572.1	type II secretion system minor pseudopilin GspJ	Machinery gene
PF555_RS08975 (PF555_08975)	xcpV	1918933..1919313 (-)	381	WP_000836911.1	type II secretion system minor pseudopilin GspI	Machinery gene
PF555_RS08980 (PF555_08980)	-	1919303..1919857 (-)	555	WP_000841373.1	type II secretion system protein	-
PF555_RS08985 (PF555_08985)	-	1919867..1920475 (-)	609	WP_000375838.1	TetR/AcrR family transcriptional regulator	-
PF555_RS08990 (PF555_08990)	-	1920513..1921286 (-)	774	WP_000497298.1	TatD family hydrolase	-
PF555_RS08995 (PF555_08995)	-	1921304..1921645 (-)	342	WP_001183024.1	PilZ domain-containing protein	-
PF555_RS09000 (PF555_09000)	-	1921657..1922637 (-)	981	WP_001075416.1	DNA polymerase III subunit delta'	-
PF555_RS09005 (PF555_09005)	kdsB	1922649..1923410 (-)	762	WP_000680694.1	3-deoxy-manno-octulosonate cytidylyltransferase	-

Sequence

Protein

• Length: 233 a.a.
• Molecular weight: 26613.59 Da
• Isoelectric Point: 9.5501

>NTDB_id=773232 PF555_RS08970 WP_000594572.1 1918232..1918933(-) (xcpW) [Acinetobacter baumannii strain 2022CK-00371]
MIKNKYIHIRSFAARLAARSSSARLTRASGFTLVELLVAIAIFAVLSLLGWKIFDYLLKVRDRNAEHEVHLFELQDAYQQ
ILRDTLQIIPLSANQGGQLHPALEIDNQILRFSKAGVTDPLKQGLSPFERIEYRYDADQKKLYRLKYTNLNTSNREQPLS
STLLSQVDQYQIMVLTPQEVTKWPEVNIDPTKPNELKKLPKGIKIQLTVAGVNYEWIYSLNQGDLSLSQEGNS

Nucleotide

• Length: 702 bp

>NTDB_id=773232 PF555_RS08970 WP_000594572.1 1918232..1918933(-) (xcpW) [Acinetobacter baumannii strain 2022CK-00371]
ATGATAAAAAATAAATATATTCACATCCGAAGCTTTGCTGCTCGCCTTGCAGCACGATCGAGCAGTGCTCGATTAACTCG
CGCCTCAGGATTTACTTTGGTTGAATTGTTAGTCGCGATCGCTATCTTTGCGGTTTTATCTTTATTGGGGTGGAAAATTT
TCGATTACTTGCTCAAAGTTCGTGATCGTAATGCCGAACATGAAGTGCATTTATTTGAATTACAAGATGCTTATCAACAA
ATTCTTCGTGATACTTTGCAGATTATCCCTTTATCCGCCAACCAAGGTGGGCAACTTCATCCAGCTTTAGAAATAGATAA
TCAAATTCTACGTTTTAGTAAAGCTGGGGTAACAGATCCTTTAAAACAAGGCTTATCACCATTTGAACGAATTGAATATC
GGTATGATGCAGATCAAAAAAAACTATATCGTCTTAAATATACAAATTTAAATACTTCGAACAGAGAGCAACCTTTATCG
AGTACTTTGTTAAGTCAAGTCGACCAATATCAGATTATGGTTTTGACTCCGCAAGAAGTCACAAAATGGCCCGAGGTTAA
TATTGATCCAACGAAACCTAATGAGTTAAAAAAATTACCGAAAGGGATAAAAATCCAACTTACAGTCGCTGGTGTAAATT
ATGAATGGATTTATAGCTTAAATCAGGGTGACTTATCGCTTTCACAGGAAGGTAATTCATAA

Domains

Predicted by InterproScan.

• Prokaryotic N-terminal methylation motif (N_methyl) (27-49)

• Type II secretion system (T2SS), protein J (T2SSJ) (83-212)

3D structure

• AlphaFold DB: A0A009IN88

Similar proteins

Only experimentally validated proteins are listed.

Protein	Organism	Identities (%)	Coverage (%)	Ha-value
xcpW	Acinetobacter baumannii D1279779	99.142	100	0.991