Detailed information NTG0773185

Bioinformatically predicted

Overview

• Name: xcpW
• Type: Machinery gene
• Locus tag: PF553_RS10265
• Genome accession: NZ_CP115643
• Coordinates: 2115547..2116248 (-)
• Length: 233 a.a.
• NCBI ID: WP_000594572.1
• Uniprot ID: A0A009IN88
• Organism: Acinetobacter baumannii strain 2022CK-00317
• Function: pseudopilus assembly (predicted from homology) DNA binding and uptake

Genomic Context

Location: 2110547..2121248

Locus tag	Gene name	Coordinates (strand)	Size (bp)	Protein ID	Product	Description
PF553_RS10235 (PF553_10235)	-	2110854..2111297 (-)	444	WP_001246676.1	SRPBCC family protein	-
PF553_RS10240 (PF553_10240)	tadA	2111367..2111870 (-)	504	WP_001997771.1	tRNA adenosine(34) deaminase TadA	-
PF553_RS10245 (PF553_10245)	-	2111877..2113001 (-)	1125	WP_001983908.1	enoyl-CoA hydratase/isomerase family protein	-
PF553_RS10250 (PF553_10250)	ung	2112998..2113711 (-)	714	WP_001177528.1	uracil-DNA glycosylase	-
PF553_RS10255 (PF553_10255)	-	2113762..2114358 (-)	597	WP_000908453.1	6-carboxytetrahydropterin synthase	-
PF553_RS10260 (PF553_10260)	gspK	2114588..2115547 (-)	960	WP_000301463.1	type II secretion system minor pseudopilin GspK	-
PF553_RS10265 (PF553_10265)	xcpW	2115547..2116248 (-)	702	WP_000594572.1	type II secretion system minor pseudopilin GspJ	Machinery gene
PF553_RS10270 (PF553_10270)	xcpV	2116248..2116628 (-)	381	WP_000836911.1	type II secretion system minor pseudopilin GspI	Machinery gene
PF553_RS10275 (PF553_10275)	-	2116618..2117172 (-)	555	WP_000841373.1	type II secretion system protein	-
PF553_RS10280 (PF553_10280)	-	2117182..2117790 (-)	609	WP_000375838.1	TetR/AcrR family transcriptional regulator	-
PF553_RS10285 (PF553_10285)	-	2117828..2118601 (-)	774	WP_000497298.1	TatD family hydrolase	-
PF553_RS10290 (PF553_10290)	-	2118619..2118960 (-)	342	WP_001183024.1	PilZ domain-containing protein	-
PF553_RS10295 (PF553_10295)	-	2118972..2119952 (-)	981	WP_001075416.1	DNA polymerase III subunit delta'	-
PF553_RS10300 (PF553_10300)	kdsB	2119964..2120725 (-)	762	WP_000680694.1	3-deoxy-manno-octulosonate cytidylyltransferase	-

Sequence

Protein

• Length: 233 a.a.
• Molecular weight: 26613.59 Da
• Isoelectric Point: 9.5501

>NTDB_id=773185 PF553_RS10265 WP_000594572.1 2115547..2116248(-) (xcpW) [Acinetobacter baumannii strain 2022CK-00317]
MIKNKYIHIRSFAARLAARSSSARLTRASGFTLVELLVAIAIFAVLSLLGWKIFDYLLKVRDRNAEHEVHLFELQDAYQQ
ILRDTLQIIPLSANQGGQLHPALEIDNQILRFSKAGVTDPLKQGLSPFERIEYRYDADQKKLYRLKYTNLNTSNREQPLS
STLLSQVDQYQIMVLTPQEVTKWPEVNIDPTKPNELKKLPKGIKIQLTVAGVNYEWIYSLNQGDLSLSQEGNS

Nucleotide

• Length: 702 bp

>NTDB_id=773185 PF553_RS10265 WP_000594572.1 2115547..2116248(-) (xcpW) [Acinetobacter baumannii strain 2022CK-00317]
ATGATAAAAAATAAATATATTCACATCCGAAGCTTTGCTGCTCGCCTTGCAGCACGATCGAGCAGTGCTCGATTAACTCG
CGCCTCAGGATTTACTTTGGTTGAATTGTTAGTCGCGATCGCTATCTTTGCGGTTTTATCTTTATTGGGGTGGAAAATTT
TCGATTACTTGCTCAAAGTTCGTGATCGTAATGCCGAACATGAAGTGCATTTATTTGAATTACAAGATGCTTATCAACAA
ATTCTTCGTGATACTTTGCAGATTATCCCTTTATCCGCCAACCAAGGTGGGCAACTTCATCCAGCTTTAGAAATAGATAA
TCAAATTCTACGTTTTAGTAAAGCTGGGGTAACAGATCCTTTAAAACAAGGCTTATCACCATTTGAACGAATTGAATATC
GGTATGATGCAGATCAAAAAAAACTATATCGTCTTAAATATACAAATTTAAATACTTCGAACAGAGAGCAACCTTTATCG
AGTACTTTGTTAAGTCAAGTCGACCAATATCAGATTATGGTTTTGACTCCGCAAGAAGTCACAAAATGGCCCGAGGTTAA
TATTGATCCAACGAAACCTAATGAGTTAAAAAAATTACCGAAAGGGATAAAAATCCAACTTACAGTCGCTGGTGTAAATT
ATGAATGGATTTATAGCTTAAATCAGGGTGACTTATCGCTTTCACAGGAAGGTAATTCATAA

Domains

Predicted by InterproScan.

• Prokaryotic N-terminal methylation motif (N_methyl) (27-49)

• Type II secretion system (T2SS), protein J (T2SSJ) (83-212)

3D structure

• AlphaFold DB: A0A009IN88

Similar proteins

Only experimentally validated proteins are listed.

Protein	Organism	Identities (%)	Coverage (%)	Ha-value
xcpW	Acinetobacter baumannii D1279779	99.142	100	0.991