Detailed information NTG0772972

Bioinformatically predicted

Overview

• Name: xcpW
• Type: Machinery gene
• Locus tag: PF552_RS09900
• Genome accession: NZ_CP115632
• Coordinates: 2083622..2084323 (-)
• Length: 233 a.a.
• NCBI ID: WP_000594580.1
• Uniprot ID: A0A836YMN8
• Organism: Acinetobacter baumannii strain 2022CK-00063
• Function: pseudopilus assembly (predicted from homology) DNA binding and uptake

Genomic Context

Location: 2078622..2089323

Locus tag	Gene name	Coordinates (strand)	Size (bp)	Protein ID	Product	Description
PF552_RS09870 (PF552_09870)	-	2078929..2079372 (-)	444	WP_031960450.1	SRPBCC family protein	-
PF552_RS09875 (PF552_09875)	tadA	2079442..2079945 (-)	504	WP_031960449.1	tRNA adenosine(34) deaminase TadA	-
PF552_RS09880 (PF552_09880)	-	2079952..2081076 (-)	1125	WP_109067466.1	enoyl-CoA hydratase/isomerase family protein	-
PF552_RS09885 (PF552_09885)	ung	2081073..2081786 (-)	714	WP_001177528.1	uracil-DNA glycosylase	-
PF552_RS09890 (PF552_09890)	-	2081837..2082433 (-)	597	WP_000908453.1	6-carboxytetrahydropterin synthase	-
PF552_RS09895 (PF552_09895)	gspK	2082663..2083622 (-)	960	WP_031960447.1	type II secretion system minor pseudopilin GspK	-
PF552_RS09900 (PF552_09900)	xcpW	2083622..2084323 (-)	702	WP_000594580.1	type II secretion system minor pseudopilin GspJ	Machinery gene
PF552_RS09905 (PF552_09905)	xcpV	2084323..2084703 (-)	381	WP_000836911.1	type II secretion system minor pseudopilin GspI	Machinery gene
PF552_RS09910 (PF552_09910)	-	2084693..2085247 (-)	555	WP_000841367.1	type II secretion system protein	-
PF552_RS09915 (PF552_09915)	-	2085257..2085865 (-)	609	WP_000375838.1	TetR/AcrR family transcriptional regulator	-
PF552_RS09920 (PF552_09920)	-	2085903..2086676 (-)	774	WP_000497298.1	TatD family hydrolase	-
PF552_RS09925 (PF552_09925)	-	2086694..2087035 (-)	342	WP_001183024.1	PilZ domain-containing protein	-
PF552_RS09930 (PF552_09930)	-	2087047..2088027 (-)	981	WP_001075416.1	DNA polymerase III subunit delta'	-
PF552_RS09935 (PF552_09935)	kdsB	2088039..2088800 (-)	762	WP_000680701.1	3-deoxy-manno-octulosonate cytidylyltransferase	-

Sequence

Protein

• Length: 233 a.a.
• Molecular weight: 26673.64 Da
• Isoelectric Point: 9.5501

>NTDB_id=772972 PF552_RS09900 WP_000594580.1 2083622..2084323(-) (xcpW) [Acinetobacter baumannii strain 2022CK-00063]
MIKNKYIHIRSFSSRLAARSSSARLTRVSGFTLVELLVAIAIFAVLSLLGWKIFDYLLKVRDRNAEHEVHLFELQDAYQQ
ILRDTLQIIPLSANQGGQLHPALEIDNQILRFSKAGVTDPLKQGLSPFERIEYRYDADQKKLYRLKYTNLNTSNREQPLS
STLLSQVDQYQIMVLTPQEVTKWPEVNIDPTKPNELKKLPKGIKIQLTVAGVNYEWIYSLNQGDLSLSQEGNS

Nucleotide

• Length: 702 bp

>NTDB_id=772972 PF552_RS09900 WP_000594580.1 2083622..2084323(-) (xcpW) [Acinetobacter baumannii strain 2022CK-00063]
ATGATAAAAAATAAATATATTCACATCCGAAGCTTTTCTTCTCGTCTTGCAGCACGATCGAGCAGTGCTCGATTAACTCG
CGTCTCAGGATTTACTTTGGTTGAATTGTTAGTCGCGATCGCTATCTTTGCGGTTTTATCTTTATTGGGGTGGAAAATTT
TCGATTACTTGCTCAAAGTTCGTGATCGTAATGCCGAACATGAAGTGCATTTATTTGAATTACAAGATGCTTATCAACAA
ATTCTTCGTGATACTTTGCAAATTATCCCTTTATCCGCAAACCAAGGTGGGCAACTTCATCCAGCTTTAGAAATCGATAA
TCAAATTTTACGTTTTAGTAAAGCTGGGGTAACAGATCCTTTAAAACAAGGCTTATCACCATTTGAACGAATTGAATATC
GTTATGATGCAGATCAAAAAAAACTATATCGTCTTAAATATACAAATTTAAATACTTCGAACAGAGAGCAACCTTTATCG
AGTACTTTGTTAAGTCAAGTCGACCAATATCAGATTATGGTTTTGACTCCGCAAGAAGTCACAAAATGGCCCGAGGTTAA
TATTGATCCAACGAAACCTAATGAGTTAAAAAAATTACCGAAAGGGATAAAAATCCAACTTACAGTCGCTGGTGTAAATT
ATGAATGGATTTATAGCTTAAATCAGGGTGACTTATCGCTTTCACAGGAAGGTAATTCATAA

Domains

Predicted by InterproScan.

• Type II secretion system (T2SS), protein J (T2SSJ) (83-212)

• Prokaryotic N-terminal methylation motif (N_methyl) (27-49)

3D structure

• AlphaFold DB: A0A836YMN8

Similar proteins

Only experimentally validated proteins are listed.

Protein	Organism	Identities (%)	Coverage (%)	Ha-value
xcpW	Acinetobacter baumannii D1279779	98.712	100	0.987