Detailed information    

insolico Bioinformatically predicted

Overview

Name   amiE   Type   Regulator
Locus tag   QRS93_RS04730 Genome accession   NZ_CP127842
Coordinates   942419..943093 (+) Length   224 a.a.
NCBI ID   WP_002982458.1    Uniprot ID   A0ABU0A9I5
Organism   Streptococcus dysgalactiae subsp. equisimilis strain TPCH-F37     
Function   internalize XIP (predicted from homology)   
Competence regulation

Genomic Context

Location: 937419..948093
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  QRS93_RS04710 (QRS93_04710) - 937668..938627 (+) 960 WP_003060473.1 DUF1002 domain-containing protein -
  QRS93_RS04715 (QRS93_04715) - 939093..940199 (-) 1107 Protein_887 IS3 family transposase -
  QRS93_RS04720 (QRS93_04720) - 940471..940755 (+) 285 WP_015016971.1 hypothetical protein -
  QRS93_RS04725 (QRS93_04725) - 941170..942432 (+) 1263 WP_015016972.1 efflux RND transporter periplasmic adaptor subunit -
  QRS93_RS04730 (QRS93_04730) amiE 942419..943093 (+) 675 WP_002982458.1 ABC transporter ATP-binding protein Regulator
  QRS93_RS04735 (QRS93_04735) - 943106..944323 (+) 1218 WP_015016973.1 ABC transporter permease -
  QRS93_RS04740 (QRS93_04740) - 944417..945070 (+) 654 WP_003059317.1 response regulator transcription factor -
  QRS93_RS04745 (QRS93_04745) - 945067..946455 (+) 1389 WP_012766899.1 HAMP domain-containing sensor histidine kinase -

Sequence

Protein


Download         Length: 224 a.a.        Molecular weight: 24826.67 Da        Isoelectric Point: 5.7977

>NTDB_id=772928 QRS93_RS04730 WP_002982458.1 942419..943093(+) (amiE) [Streptococcus dysgalactiae subsp. equisimilis strain TPCH-F37]
MLNLKDIRKSYHLGTEEFAILKGIDLEVNEGDFLAIMGPSGSGKSTLMNIIGCLDKPGSGSYAIEGRDVSSLSDNELADL
RNQKIGFVFQNFNLMPKLTACQNVELPLTYMNVPKKERRKRALEMLKLVGLEERSEFKPMELSGGQKQRVAIARALVTNP
SFILGDEPTGALDTKTSVQIMDLFKQFNDNGKTIIIITHEPEVAALCKKTVILRDGNIEHSDIE

Nucleotide


Download         Length: 675 bp        

>NTDB_id=772928 QRS93_RS04730 WP_002982458.1 942419..943093(+) (amiE) [Streptococcus dysgalactiae subsp. equisimilis strain TPCH-F37]
TTGTTAAACCTTAAAGATATTCGAAAAAGCTATCATCTTGGGACTGAAGAATTTGCGATTTTAAAAGGAATCGATTTAGA
AGTTAACGAGGGTGACTTTTTAGCCATCATGGGACCATCAGGTTCAGGAAAGTCAACATTGATGAATATCATTGGGTGCT
TAGATAAGCCTGGCTCTGGCTCATATGCCATTGAAGGCAGAGACGTGTCGTCCTTATCTGATAATGAACTTGCTGATTTG
CGCAATCAAAAAATCGGCTTTGTTTTTCAAAACTTTAACCTGATGCCCAAGCTAACAGCTTGTCAAAACGTCGAATTGCC
CTTGACCTACATGAATGTTCCTAAAAAAGAGCGTCGCAAACGAGCCCTAGAGATGTTAAAGCTAGTAGGACTAGAAGAAC
GTAGTGAATTTAAACCGATGGAGCTATCTGGTGGGCAAAAACAGCGTGTAGCGATTGCAAGAGCTTTAGTCACTAACCCA
AGCTTTATCCTTGGCGATGAGCCAACGGGTGCACTAGATACAAAAACCAGCGTCCAAATCATGGACCTATTTAAACAATT
CAATGATAACGGTAAAACGATTATTATCATCACACACGAGCCTGAAGTAGCTGCCCTATGCAAAAAGACGGTGATCCTAA
GAGATGGTAATATAGAACATTCCGATATAGAGTAA

Domains

Predicted by InterProScan.

ABC transporter (ABC_tran)

(21-169)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  amiE Streptococcus salivarius strain HSISS4

34.454

100

0.366