Detailed information    

insolico Bioinformatically predicted

Overview

Name   comQ   Type   Machinery gene
Locus tag   QRO24_RS11690 Genome accession   NZ_CP127829
Coordinates   2450532..2450828 (+) Length   98 a.a.
NCBI ID   WP_409025783.1    Uniprot ID   -
Organism   Gallibacterium anatis strain OH/Ck/12965/20     
Function   type IV pilus biogenesis and function (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 2445532..2455828
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  QRO24_RS11655 - 2445698..2446039 (+) 342 Protein_2255 ACT domain-containing protein -
  QRO24_RS11660 (QRO24_11600) - 2446382..2447275 (+) 894 WP_371128160.1 sigma 54-interacting transcriptional regulator -
  QRO24_RS11665 (QRO24_11605) sspA 2447416..2448054 (+) 639 WP_013745826.1 stringent starvation protein SspA -
  QRO24_RS11670 (QRO24_11610) - 2448064..2448525 (+) 462 WP_039085375.1 ClpXP protease specificity-enhancing factor -
  QRO24_RS11675 (QRO24_11615) - 2448669..2449202 (+) 534 WP_335798937.1 prepilin-type N-terminal cleavage/methylation domain-containing protein -
  QRO24_RS11680 (QRO24_11620) - 2449192..2449914 (+) 723 WP_409025781.1 Type II secretory pathway, component PulJ -
  QRO24_RS11685 (QRO24_11625) - 2449886..2450551 (+) 666 WP_409025782.1 DUF2572 family protein -
  QRO24_RS11690 (QRO24_11630) comQ 2450532..2450828 (+) 297 WP_409025783.1 DUF5374 domain-containing protein Machinery gene
  QRO24_RS11695 (QRO24_11635) glpE 2450888..2451214 (+) 327 WP_039084270.1 thiosulfate sulfurtransferase GlpE -
  QRO24_RS11700 (QRO24_11640) - 2451362..2451880 (+) 519 WP_039094672.1 NADPH-dependent FMN reductase -
  QRO24_RS11705 (QRO24_11645) - 2451877..2452782 (+) 906 WP_094871988.1 pirin family protein -
  QRO24_RS11710 (QRO24_11650) ppx 2452866..2454350 (-) 1485 WP_409025784.1 exopolyphosphatase -

Sequence

Protein


Download         Length: 98 a.a.        Molecular weight: 11162.12 Da        Isoelectric Point: 10.0354

>NTDB_id=772875 QRO24_RS11690 WP_409025783.1 2450532..2450828(+) (comQ) [Gallibacterium anatis strain OH/Ck/12965/20]
MILTQRNLKGSAIINVLVTLIFLSLLLLSTQHWIKRQQQQTAILWQATQALQIAENQWNLRVIGENCEKNIQQNGIVFNI
QCSGNQVVVHYPLGKIVL

Nucleotide


Download         Length: 297 bp        

>NTDB_id=772875 QRO24_RS11690 WP_409025783.1 2450532..2450828(+) (comQ) [Gallibacterium anatis strain OH/Ck/12965/20]
GTGATTTTGACGCAACGTAATCTGAAAGGCAGTGCTATTATCAATGTCTTGGTGACGCTGATATTTTTGTCACTGTTATT
ACTGTCGACACAGCATTGGATTAAGCGGCAACAGCAGCAAACGGCAATTTTGTGGCAAGCGACACAGGCTTTGCAAATTG
CTGAAAATCAATGGAATTTAAGAGTCATCGGTGAAAATTGTGAAAAAAATATACAACAAAACGGCATTGTTTTTAATATC
CAATGCAGCGGCAATCAGGTAGTGGTGCATTATCCGCTGGGAAAAATTGTGTTGTAA

Domains

Predicted by InterProScan.

Family of unknown function (DUF5374) (DUF5374)

(59-98)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comQ Haemophilus influenzae Rd KW20

39.796

100

0.398