Detailed information    

insolico Bioinformatically predicted

Overview

Name   pilN   Type   Machinery gene
Locus tag   PF364_RS17380 Genome accession   NZ_CP115621
Coordinates   3615016..3615657 (-) Length   213 a.a.
NCBI ID   WP_031961396.1    Uniprot ID   A0A836M414
Organism   Acinetobacter baumannii strain 2022CK-00480     
Function   assembly of type IV pilus (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 3610016..3620657
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  PF364_RS17360 (PF364_17360) aroK 3610932..3611501 (-) 570 WP_000643712.1 shikimate kinase AroK -
  PF364_RS17365 (PF364_17365) pilQ 3611513..3613678 (-) 2166 WP_001017033.1 type IV pilus secretin PilQ family protein Machinery gene
  PF364_RS17370 (PF364_17370) pilP 3613741..3614268 (-) 528 WP_000695065.1 pilus assembly protein PilP Machinery gene
  PF364_RS17375 (PF364_17375) pilO 3614279..3615019 (-) 741 WP_000076106.1 type 4a pilus biogenesis protein PilO Machinery gene
  PF364_RS17380 (PF364_17380) pilN 3615016..3615657 (-) 642 WP_031961396.1 PilN domain-containing protein Machinery gene
  PF364_RS17385 (PF364_17385) pilM 3615657..3616715 (-) 1059 WP_031961398.1 pilus assembly protein PilM Machinery gene
  PF364_RS17390 (PF364_17390) ponA 3616877..3619432 (+) 2556 WP_031965088.1 penicillin-binding protein PBP1a -
  PF364_RS17395 (PF364_17395) - 3619450..3620274 (-) 825 WP_002019666.1 putative RNA methyltransferase -
  PF364_RS17400 (PF364_17400) - 3620277..3620609 (-) 333 WP_000169602.1 hypothetical protein -

Sequence

Protein


Download         Length: 213 a.a.        Molecular weight: 23931.29 Da        Isoelectric Point: 5.8563

>NTDB_id=772822 PF364_RS17380 WP_031961396.1 3615016..3615657(-) (pilN) [Acinetobacter baumannii strain 2022CK-00480]
MATINLLPWREELREQRKKQFITLCFGVVVLGITTVFGGWFYFDHKLDDQEQANQLIMSTNQNLDQQLKTLNGLQEQRDA
IIERMKLIQGLQSQRPVVVRLVDELVRVTPPAMYLTKFSRTGDKFTIEGKAESPNTVAELLRNLEASPWYRNAFMNSFLA
NEEKKDKAASSLLPRVEDHYGSFVVTVDLGEMGVATTDDSAKTSTGGSVGAAK

Nucleotide


Download         Length: 642 bp        

>NTDB_id=772822 PF364_RS17380 WP_031961396.1 3615016..3615657(-) (pilN) [Acinetobacter baumannii strain 2022CK-00480]
ATGGCAACAATTAATTTACTGCCTTGGCGCGAAGAGCTGAGGGAGCAACGAAAAAAACAATTTATAACGTTATGTTTTGG
GGTGGTTGTTTTGGGGATTACAACCGTATTTGGGGGATGGTTTTATTTTGACCATAAATTAGATGATCAAGAGCAAGCGA
ATCAGCTCATTATGAGCACAAATCAGAACCTTGATCAGCAATTAAAAACATTAAACGGCTTACAGGAACAGCGTGATGCC
ATTATTGAACGCATGAAGTTGATCCAAGGTTTGCAGAGTCAACGTCCAGTAGTGGTAAGACTTGTTGATGAGTTAGTTCG
AGTCACACCACCAGCTATGTATTTAACGAAATTTAGCCGAACCGGAGATAAGTTTACGATTGAAGGTAAAGCTGAGAGTC
CAAATACAGTAGCCGAACTACTCCGTAATCTTGAAGCATCTCCTTGGTATCGTAATGCTTTTATGAACTCTTTCTTGGCT
AATGAAGAGAAAAAAGATAAGGCTGCAAGTTCTCTTCTTCCTAGGGTGGAAGACCACTATGGTAGTTTTGTTGTGACTGT
CGATTTGGGGGAAATGGGCGTGGCCACAACGGATGATTCTGCTAAGACATCTACAGGTGGAAGTGTGGGGGCTGCTAAAT
GA

Domains

Predicted by InterproScan.

Fimbrial assembly protein (PilN) (PilN)

(100-167)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB A0A836M414

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  pilN Acinetobacter baumannii D1279779

98.122

100

0.981
  comN Acinetobacter baylyi ADP1

71.77

98.122

0.704