Detailed information    

insolico Bioinformatically predicted

Overview

Name   codY   Type   Regulator
Locus tag   PAN99_RS08195 Genome accession   NZ_CP115604
Coordinates   1618432..1619211 (+) Length   259 a.a.
NCBI ID   WP_003154263.1    Uniprot ID   I2C545
Organism   Bacillus velezensis strain FJAT-54560     
Function   repression of comK (predicted from homology)   
Competence regulation

Genomic Context

Location: 1613432..1624211
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  PAN99_RS08175 (PAN99_08175) trmFO 1614119..1615426 (+) 1308 WP_003154273.1 FADH(2)-oxidizing methylenetetrahydrofolate--tRNA-(uracil(54)-C(5))- methyltransferase TrmFO -
  PAN99_RS08180 (PAN99_08180) xerC 1615496..1616413 (+) 918 WP_043867088.1 tyrosine recombinase XerC -
  PAN99_RS08185 (PAN99_08185) hslV 1616429..1616974 (+) 546 WP_003154267.1 ATP-dependent protease subunit HslV -
  PAN99_RS08190 (PAN99_08190) hslU 1616991..1618394 (+) 1404 WP_014305002.1 HslU--HslV peptidase ATPase subunit -
  PAN99_RS08195 (PAN99_08195) codY 1618432..1619211 (+) 780 WP_003154263.1 GTP-sensing pleiotropic transcriptional regulator CodY Regulator
  PAN99_RS08200 (PAN99_08200) flgB 1619565..1619954 (+) 390 WP_003154260.1 flagellar basal body rod protein FlgB -
  PAN99_RS08205 (PAN99_08205) flgC 1619954..1620406 (+) 453 WP_003154259.1 flagellar basal body rod protein FlgC -
  PAN99_RS08210 (PAN99_08210) fliE 1620417..1620737 (+) 321 WP_007409777.1 flagellar hook-basal body complex protein FliE -
  PAN99_RS08215 (PAN99_08215) fliF 1620780..1622390 (+) 1611 WP_003154257.1 flagellar basal-body MS-ring/collar protein FliF -
  PAN99_RS08220 (PAN99_08220) fliG 1622403..1623419 (+) 1017 WP_003154256.1 flagellar motor switch protein FliG -
  PAN99_RS08225 (PAN99_08225) fliH 1623412..1624167 (+) 756 WP_003154255.1 flagellar assembly protein FliH -

Sequence

Protein


Download         Length: 259 a.a.        Molecular weight: 29056.24 Da        Isoelectric Point: 4.6017

>NTDB_id=772719 PAN99_RS08195 WP_003154263.1 1618432..1619211(+) (codY) [Bacillus velezensis strain FJAT-54560]
MALLQKTRIINSMLQAAAGKPVNFKEMAETLRDVIDSNIFVVSRRGKLLGYSINQQIENDRMKKMLEDRQFPEEYTRNLF
NVPETSSNLDINSEYTAFPVENRDLFQAGLTTIVPIIGGGERLGTLILSRLQDQFEDDDLILAEYGATVVGMEILREKAE
EIEEEARSKAVVQMAISSLSYSELEAIEHIFEELDGNEGLLVASKIADRVGITRSVIVNALRKLESAGVIESRSLGMKGT
YIKVLNNKFLIELENLKSH

Nucleotide


Download         Length: 780 bp        

>NTDB_id=772719 PAN99_RS08195 WP_003154263.1 1618432..1619211(+) (codY) [Bacillus velezensis strain FJAT-54560]
ATGGCTTTACTACAAAAAACACGAATTATTAACAGCATGCTGCAGGCTGCGGCAGGCAAACCCGTAAACTTTAAAGAAAT
GGCTGAAACGCTTCGTGACGTCATTGATTCTAATATTTTCGTCGTCAGCCGCAGAGGAAAGCTTTTGGGCTACTCTATTA
ATCAGCAGATTGAAAATGACCGCATGAAAAAAATGCTTGAAGACCGCCAGTTCCCGGAAGAGTACACGAGAAATCTGTTC
AATGTTCCGGAGACGTCTTCAAACCTTGATATCAACAGCGAATACACGGCGTTTCCTGTGGAAAACAGAGACCTGTTCCA
AGCGGGCTTAACAACGATCGTGCCGATCATCGGCGGAGGAGAGAGACTGGGCACGCTGATTCTGTCCCGTCTGCAGGATC
AATTTGAAGATGATGATCTCATTCTTGCTGAATACGGAGCAACCGTTGTAGGAATGGAGATTTTAAGAGAAAAAGCGGAA
GAAATCGAAGAAGAGGCGCGAAGCAAAGCGGTTGTTCAAATGGCGATCAGTTCTCTGTCTTACAGTGAACTTGAAGCGAT
TGAGCATATCTTTGAAGAGCTTGACGGAAACGAAGGCTTGCTTGTGGCAAGTAAGATTGCGGACCGTGTCGGCATTACGC
GTTCAGTAATCGTTAACGCGCTGAGAAAGCTGGAAAGCGCAGGCGTCATTGAATCCAGATCACTGGGAATGAAGGGGACG
TACATTAAAGTTCTGAACAACAAATTCCTTATTGAATTGGAAAACCTTAAATCTCATTAA

Domains

Predicted by InterproScan.

CodY GAF-like domain (CodY)

(3-178)

CodY helix-turn-helix domain (HTH_CodY)

(198-255)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB I2C545

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  codY Bacillus subtilis subsp. subtilis str. 168

99.228

100

0.992
  codY Lactococcus lactis subsp. lactis strain DGCC12653

47.843

98.456

0.471