Detailed information    

insolico Bioinformatically predicted

Overview

Name   comF   Type   Machinery gene
Locus tag   QR565_RS24145 Genome accession   NZ_CP127387
Coordinates   5201839..5202264 (+) Length   141 a.a.
NCBI ID   WP_003094721.1    Uniprot ID   G3XD43
Organism   Pseudomonas aeruginosa strain 101901100740-1     
Function   assembly of type IV pilus (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 5196839..5207264
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  QR565_RS24130 pilX 5197403..5197990 (+) 588 WP_003112826.1 type 4a pilus minor pilin PilX -
  QR565_RS24135 pilY1 5198002..5201493 (+) 3492 WP_033999239.1 type 4a pilus biogenesis protein PilY1 -
  QR565_RS24140 pilY2 5201495..5201842 (+) 348 WP_003102609.1 type 4a fimbrial biogenesis protein PilY2 -
  QR565_RS24145 comF 5201839..5202264 (+) 426 WP_003094721.1 type 4a pilus minor pilin PilE Machinery gene
  QR565_RS24150 ispH 5202311..5203255 (-) 945 WP_003094724.1 4-hydroxy-3-methylbut-2-enyl diphosphate reductase -
  QR565_RS24155 fkpB 5203341..5203781 (-) 441 WP_003102613.1 FKBP-type peptidyl-prolyl cis-trans isomerase -
  QR565_RS24160 lspA 5203774..5204283 (-) 510 WP_003102615.1 signal peptidase II -
  QR565_RS24165 ileS 5204276..5207107 (-) 2832 WP_003102617.1 isoleucine--tRNA ligase -

Sequence

Protein


Download         Length: 141 a.a.        Molecular weight: 15279.30 Da        Isoelectric Point: 10.0198

>NTDB_id=772622 QR565_RS24145 WP_003094721.1 5201839..5202264(+) (comF) [Pseudomonas aeruginosa strain 101901100740-1]
MRTRQKGFTLLEMVVVVAVIGILLGIAIPSYQNYVIRSNRTEGQALLSDAAARQERYYSQNPGVGYTKDVAKLGMSSANS
PNNLYNLTIATPTSTTYTLTATPINSQTRDKTCGKLTLNQLGERGAAGKTGNNSTVNDCWR

Nucleotide


Download         Length: 426 bp        

>NTDB_id=772622 QR565_RS24145 WP_003094721.1 5201839..5202264(+) (comF) [Pseudomonas aeruginosa strain 101901100740-1]
ATGAGGACAAGACAGAAGGGCTTCACGTTGCTGGAAATGGTGGTGGTAGTGGCGGTGATCGGCATCCTCCTCGGCATCGC
CATTCCCAGTTACCAGAACTACGTGATCCGCTCCAACCGCACCGAGGGGCAGGCGCTGCTCTCGGACGCGGCCGCGCGCC
AGGAACGCTACTACTCGCAGAACCCCGGGGTCGGCTACACCAAGGACGTGGCCAAGCTGGGCATGAGTTCGGCCAACTCG
CCGAACAACCTGTACAACCTCACCATAGCGACGCCCACCAGCACCACCTATACCCTGACCGCCACGCCGATCAACTCGCA
GACCCGCGACAAGACCTGCGGCAAGCTGACCCTCAATCAGCTCGGCGAACGCGGCGCAGCCGGCAAGACCGGCAACAACA
GCACCGTCAACGACTGCTGGCGCTGA

Domains

Predicted by InterProScan.

Type IV minor pilin ComP, DNA uptake sequence receptor (ComP_DUS)

(29-117)

Prokaryotic N-terminal methylation motif (N_methyl)

(3-27)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  PDB 4NOA

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comF Acinetobacter baylyi ADP1

42.188

90.78

0.383