Detailed information    

insolico Bioinformatically predicted

Overview

Name   comYH   Type   Machinery gene
Locus tag   PDI73_RS08495 Genome accession   NZ_CP115479
Coordinates   1761480..1762418 (-) Length   312 a.a.
NCBI ID   WP_277730153.1    Uniprot ID   -
Organism   Lactococcus lactis strain EP2     
Function   dsDNA binding to the cell surface; assembly of the pseudopilus (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 1756480..1767418
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  PDI73_RS08470 (PDI73_08470) frr 1756598..1757155 (-) 558 WP_004254618.1 ribosome recycling factor -
  PDI73_RS08475 (PDI73_08475) pyrH 1757367..1758083 (-) 717 WP_021464089.1 UMP kinase -
  PDI73_RS08480 (PDI73_08480) - 1758168..1758620 (-) 453 WP_021464090.1 hypothetical protein -
  PDI73_RS08485 (PDI73_08485) - 1758754..1759941 (-) 1188 WP_015427114.1 acetate kinase -
  PDI73_RS08490 (PDI73_08490) - 1760098..1761285 (-) 1188 WP_004254593.1 acetate kinase -
  PDI73_RS08495 (PDI73_08495) comYH 1761480..1762418 (-) 939 WP_277730153.1 class I SAM-dependent methyltransferase Machinery gene
  PDI73_RS08500 (PDI73_08500) - 1762506..1762757 (-) 252 WP_004254583.1 DUF3165 family protein -
  PDI73_RS08505 (PDI73_08505) typA 1762858..1764690 (-) 1833 WP_025016832.1 translational GTPase TypA -
  PDI73_RS11490 - 1764878..1765334 (-) 457 Protein_1658 hypothetical protein -
  PDI73_RS08515 (PDI73_08515) - 1765336..1765740 (-) 405 WP_277730154.1 hypothetical protein -
  PDI73_RS08520 (PDI73_08520) - 1765753..1766379 (-) 627 WP_033900782.1 ABC transporter ATP-binding protein -

Sequence

Protein


Download         Length: 312 a.a.        Molecular weight: 34710.88 Da        Isoelectric Point: 4.4060

>NTDB_id=772488 PDI73_RS08495 WP_277730153.1 1761480..1762418(-) (comYH) [Lactococcus lactis strain EP2]
MDMEKVAQGFELVVANIMLLSEKLDTDFYDAFVEQNAAFLDDTDQGIVELSVNNGKLRQLNLSNKEWQKLFQFVLLKGSQ
VAPLQPNHAMTPDAIGLIFNFIIEHLNKNSELRLIEFGSGMGNLAETLLVNLNKKVDYVGFEVDDLLLDLSASMAEIMGS
QAEFMQIDAVQKRLMEPADVVVSDLPIGFYPDDEVAKNFEVATTDGHTFAHHLLIEQSFNYLKEGSFAIFLAPEDLLTSP
QGPLLKEWISKHGSVMAVITLPKSLFNADAKAIYVLKKGPAAHAAFAHPLSSLTDRESLEVFMEEFTKIVKL

Nucleotide


Download         Length: 939 bp        

>NTDB_id=772488 PDI73_RS08495 WP_277730153.1 1761480..1762418(-) (comYH) [Lactococcus lactis strain EP2]
ATGGATATGGAAAAAGTGGCTCAAGGTTTTGAGCTAGTTGTTGCAAATATTATGTTACTATCTGAGAAATTGGATACAGA
TTTTTATGATGCTTTTGTAGAACAAAATGCTGCTTTTTTAGATGATACTGACCAAGGAATTGTTGAATTGTCAGTAAATA
ATGGCAAACTTCGTCAGTTAAATTTATCAAATAAGGAGTGGCAAAAACTTTTTCAATTTGTTTTGTTGAAAGGGTCACAA
GTCGCACCACTTCAGCCCAATCATGCAATGACTCCAGATGCAATTGGTTTAATTTTTAATTTCATTATTGAACATCTTAA
TAAAAATTCTGAACTTCGTTTAATTGAATTTGGGTCTGGCATGGGTAATCTTGCTGAAACGCTTTTGGTTAATCTTAATA
AAAAGGTTGATTATGTAGGCTTTGAAGTTGATGATTTACTTTTAGATTTGTCTGCTTCAATGGCTGAAATTATGGGGAGT
CAGGCTGAGTTCATGCAAATTGATGCAGTACAAAAGCGTTTGATGGAACCTGCAGACGTTGTTGTCAGTGATTTACCAAT
TGGTTTTTATCCAGATGATGAAGTTGCAAAGAATTTTGAAGTTGCGACTACTGACGGACATACTTTTGCTCATCATCTTT
TGATTGAGCAATCATTTAATTATTTAAAAGAGGGTTCTTTTGCCATTTTCCTAGCTCCAGAAGATTTACTGACAAGTCCT
CAAGGACCACTATTAAAGGAGTGGATTAGTAAACATGGAAGTGTGATGGCTGTCATCACTTTACCAAAATCACTTTTTAA
TGCTGATGCTAAGGCGATTTATGTTTTGAAAAAGGGGCCGGCTGCACATGCAGCTTTTGCTCACCCTTTGTCTTCACTGA
CAGACAGAGAAAGTTTAGAAGTCTTTATGGAAGAATTTACAAAAATTGTAAAATTATAA

Domains


No domain identified.



Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comYH Streptococcus mutans UA140

48.882

100

0.49
  comYH Streptococcus mutans UA159

48.562

100

0.487