Detailed information    

insolico Bioinformatically predicted

Overview

Name   comF   Type   Machinery gene
Locus tag   QRA10_RS17360 Genome accession   NZ_CP127342
Coordinates   3767457..3767882 (+) Length   141 a.a.
NCBI ID   WP_003094721.1    Uniprot ID   G3XD43
Organism   Pseudomonas aeruginosa strain 18C53     
Function   assembly of type IV pilus (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 3762457..3772882
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  QRA10_RS17345 (QRA10_17320) pilX 3763021..3763608 (+) 588 WP_023090846.1 type 4a pilus minor pilin PilX -
  QRA10_RS17350 (QRA10_17325) pilY1 3763620..3767111 (+) 3492 WP_406644044.1 type 4a pilus biogenesis protein PilY1 -
  QRA10_RS17355 (QRA10_17330) pilY2 3767113..3767460 (+) 348 WP_406644045.1 type 4a fimbrial biogenesis protein PilY2 -
  QRA10_RS17360 (QRA10_17335) comF 3767457..3767882 (+) 426 WP_003094721.1 type 4a pilus minor pilin PilE Machinery gene
  QRA10_RS17365 (QRA10_17340) ispH 3767929..3768873 (-) 945 WP_023090847.1 4-hydroxy-3-methylbut-2-enyl diphosphate reductase -
  QRA10_RS17370 (QRA10_17345) fkpB 3768959..3769399 (-) 441 WP_023090848.1 FKBP-type peptidyl-prolyl cis-trans isomerase -
  QRA10_RS17375 (QRA10_17350) lspA 3769392..3769901 (-) 510 WP_003102615.1 signal peptidase II -
  QRA10_RS17380 (QRA10_17355) ileS 3769894..3772725 (-) 2832 WP_023128442.1 isoleucine--tRNA ligase -

Sequence

Protein


Download         Length: 141 a.a.        Molecular weight: 15279.30 Da        Isoelectric Point: 10.0198

>NTDB_id=772412 QRA10_RS17360 WP_003094721.1 3767457..3767882(+) (comF) [Pseudomonas aeruginosa strain 18C53]
MRTRQKGFTLLEMVVVVAVIGILLGIAIPSYQNYVIRSNRTEGQALLSDAAARQERYYSQNPGVGYTKDVAKLGMSSANS
PNNLYNLTIATPTSTTYTLTATPINSQTRDKTCGKLTLNQLGERGAAGKTGNNSTVNDCWR

Nucleotide


Download         Length: 426 bp        

>NTDB_id=772412 QRA10_RS17360 WP_003094721.1 3767457..3767882(+) (comF) [Pseudomonas aeruginosa strain 18C53]
ATGAGGACAAGACAGAAGGGCTTCACGTTGCTGGAAATGGTGGTGGTAGTGGCGGTGATCGGCATCCTCCTCGGCATCGC
CATTCCCAGTTACCAGAACTACGTGATCCGCTCCAACCGCACCGAGGGCCAGGCCCTGCTCTCGGACGCGGCCGCGCGCC
AGGAACGCTACTACTCGCAGAACCCCGGGGTCGGCTACACCAAGGACGTGGCCAAGCTGGGCATGAGTTCGGCCAACTCG
CCGAACAACCTGTACAACCTCACCATAGCGACGCCCACCAGCACCACCTATACCCTGACCGCCACGCCGATCAACTCGCA
GACCCGCGACAAGACCTGCGGCAAGCTGACCCTCAATCAGCTCGGCGAACGCGGCGCAGCCGGCAAGACCGGCAACAACA
GCACCGTCAACGACTGCTGGCGCTGA

Domains

Predicted by InterProScan.

Type IV minor pilin ComP, DNA uptake sequence receptor (ComP_DUS)

(29-117)

Prokaryotic N-terminal methylation motif (N_methyl)

(3-27)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  PDB 4NOA

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comF Acinetobacter baylyi ADP1

42.188

90.78

0.383