Detailed information    

insolico Bioinformatically predicted

Overview

Name   pilD   Type   Machinery gene
Locus tag   QRX37_RS18435 Genome accession   NZ_CP127324
Coordinates   3764852..3765319 (+) Length   155 a.a.
NCBI ID   WP_000340159.1    Uniprot ID   -
Organism   Escherichia coli strain 980-2     
Function   assembly of type IV pilus (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 3759852..3770319
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  QRX37_RS18390 (QRX37_18365) rplP 3759962..3760372 (-) 411 WP_000941212.1 50S ribosomal protein L16 -
  QRX37_RS18395 (QRX37_18370) rpsC 3760385..3761086 (-) 702 WP_000529945.1 30S ribosomal protein S3 -
  QRX37_RS18400 (QRX37_18375) rplV 3761104..3761436 (-) 333 WP_000447529.1 50S ribosomal protein L22 -
  QRX37_RS18405 (QRX37_18380) rpsS 3761451..3761729 (-) 279 WP_001138117.1 30S ribosomal protein S19 -
  QRX37_RS18410 (QRX37_18385) rplB 3761746..3762567 (-) 822 WP_000301864.1 50S ribosomal protein L2 -
  QRX37_RS18415 (QRX37_18390) rplW 3762585..3762887 (-) 303 WP_000617544.1 50S ribosomal protein L23 -
  QRX37_RS18420 (QRX37_18395) rplD 3762884..3763489 (-) 606 WP_000424395.1 50S ribosomal protein L4 -
  QRX37_RS18425 (QRX37_18400) rplC 3763500..3764129 (-) 630 WP_000579833.1 50S ribosomal protein L3 -
  QRX37_RS18430 (QRX37_18405) rpsJ 3764162..3764473 (-) 312 WP_001181004.1 30S ribosomal protein S10 -
  QRX37_RS18435 (QRX37_18410) pilD 3764852..3765319 (+) 468 WP_000340159.1 A24 family peptidase Machinery gene
  QRX37_RS18440 (QRX37_18415) bfr 3765316..3765792 (-) 477 WP_000675515.1 bacterioferritin -
  QRX37_RS18445 (QRX37_18420) bfd 3765865..3766059 (-) 195 WP_000289090.1 bacterioferritin-associated ferredoxin -
  QRX37_RS18450 (QRX37_18425) tuf 3766242..3767426 (-) 1185 WP_000031783.1 elongation factor Tu -
  QRX37_RS18455 (QRX37_18430) fusA 3767497..3769611 (-) 2115 WP_000124700.1 elongation factor G -
  QRX37_RS18460 (QRX37_18435) rpsG 3769708..3770178 (-) 471 WP_001138043.1 30S ribosomal protein S7 -

Sequence

Protein


Download         Length: 155 a.a.        Molecular weight: 17034.17 Da        Isoelectric Point: 8.1255

>NTDB_id=772329 QRX37_RS18435 WP_000340159.1 3764852..3765319(+) (pilD) [Escherichia coli strain 980-2]
MDATLPFLILYACLSALLFFWDAKHGLLPDRFTCPLLWSGLLFYQVCNPDGLADALWGAIIGYGTFAVIYWGYRILRHKE
GLGYGDVKFLAALGAWHTWTFLPRLVFLAASFACGAVVIGLLMRGKESLKNPLPFGPFLAAAGFVVGWDSLLAGR

Nucleotide


Download         Length: 468 bp        

>NTDB_id=772329 QRX37_RS18435 WP_000340159.1 3764852..3765319(+) (pilD) [Escherichia coli strain 980-2]
ATGGACGCTACCCTTCCCTTTCTGATTTTGTACGCTTGTTTATCAGCCCTACTTTTTTTCTGGGATGCAAAGCATGGCTT
GTTACCTGACAGATTTACCTGCCCGTTACTCTGGTCAGGTCTTTTGTTCTATCAGGTTTGTAATCCTGACGGTTTAGCCG
ATGCGTTATGGGGGGCGATTATTGGTTACGGCACATTCGCTGTCATTTACTGGGGGTATCGCATACTGCGTCATAAAGAA
GGATTAGGCTATGGTGATGTGAAGTTTCTCGCCGCCCTTGGTGCCTGGCATACATGGACCTTCTTGCCACGACTGGTTTT
CCTTGCTGCCTCATTCGCTTGCGGAGCCGTAGTTATTGGTCTGCTCATGAGAGGAAAAGAGTCATTAAAAAACCCGCTGC
CGTTTGGGCCATTTCTGGCGGCTGCGGGTTTCGTTGTAGGCTGGGATAGTTTGCTGGCAGGCCGTTAA

Domains

Predicted by InterProScan.

Type IV leader peptidase family (Peptidase_A24)

(11-117)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  pilD Vibrio cholerae strain A1552

44.882

81.935

0.368