Detailed information    

insolico Bioinformatically predicted

Overview

Name   amiE   Type   Regulator
Locus tag   QRM68_RS06060 Genome accession   NZ_CP127303
Coordinates   921936..922700 (+) Length   254 a.a.
NCBI ID   WP_001136211.1    Uniprot ID   -
Organism   Escherichia coli strain APEC37     
Function   internalize XIP (predicted from homology)   
Competence regulation

Genomic Context

Location: 916936..927700
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  QRM68_RS06040 (QRM68_06040) acpT 917890..918477 (+) 588 WP_000285784.1 4'-phosphopantetheinyl transferase AcpT -
  QRM68_RS06045 (QRM68_06045) nikA 918588..920162 (+) 1575 WP_000953368.1 nickel ABC transporter substrate-binding protein -
  QRM68_RS06050 (QRM68_06050) nikB 920162..921106 (+) 945 WP_000947082.1 nickel ABC transporter permease subunit NikB -
  QRM68_RS06055 (QRM68_06055) nikC 921103..921936 (+) 834 WP_001008963.1 nickel ABC transporter permease subunit NikC -
  QRM68_RS06060 (QRM68_06060) amiE 921936..922700 (+) 765 WP_001136211.1 nickel import ATP-binding protein NikD Regulator
  QRM68_RS06065 (QRM68_06065) nikE 922697..923503 (+) 807 WP_021557287.1 nickel import ATP-binding protein NikE -
  QRM68_RS06070 (QRM68_06070) nikR 923509..923910 (+) 402 WP_001190062.1 nickel-responsive transcriptional regulator NikR -
  QRM68_RS06075 (QRM68_06075) - 924109..924855 (+) 747 WP_001308115.1 GntR family transcriptional regulator -
  QRM68_RS06080 (QRM68_06080) - 924880..925353 (+) 474 WP_001161650.1 PTS sugar transporter subunit IIA -
  QRM68_RS06085 (QRM68_06085) - 925350..925631 (+) 282 WP_000084025.1 PTS sugar transporter subunit IIB -
  QRM68_RS06090 (QRM68_06090) - 925708..927066 (+) 1359 WP_001308116.1 PTS galactitol transporter subunit IIC -

Sequence

Protein


Download         Length: 254 a.a.        Molecular weight: 26812.45 Da        Isoelectric Point: 6.9016

>NTDB_id=771964 QRM68_RS06060 WP_001136211.1 921936..922700(+) (amiE) [Escherichia coli strain APEC37]
MPQQIELRNIALQAAQPLVHGVSLTLKRGRVLALVGGSGSGKSLTCAATLGILPAGVRQTAGEILADGKPVSPCALRGIK
IATIMQNPRSAFNPLHTMHTHARETCLALGKPADDATLTAAIEAVGLENAARVLKLYPFEMSGGMLQRMMIAMAVLCESP
FIIADEPTTDLDVVAQARILDLLESIMQKQAPGMLLVTHDMGVVARLADDVAVMSHGKIVEQGDVETLFNAPKHAVTRSL
VSAHLALYGMELAS

Nucleotide


Download         Length: 765 bp        

>NTDB_id=771964 QRM68_RS06060 WP_001136211.1 921936..922700(+) (amiE) [Escherichia coli strain APEC37]
ATGCCGCAACAGATTGAACTGCGTAATATCGCGCTACAGGCCGCGCAGCCGCTGGTGCACGGCGTATCGTTAACCCTTAA
ACGCGGGCGTGTGCTGGCGTTAGTCGGCGGTAGCGGCAGCGGGAAATCACTGACCTGCGCCGCGACGCTGGGCATTCTGC
CCGCTGGCGTTCGCCAGACGGCGGGGGAAATTTTAGCCGATGGCAAACCGGTTTCGCCTTGCGCCCTGCGCGGCATCAAA
ATTGCCACCATCATGCAGAACCCGCGCAGCGCCTTTAATCCACTGCACACCATGCACACCCACGCGCGGGAAACCTGCCT
GGCGTTAGGGAAACCCGCCGATGACGCTACGCTTACCGCTGCCATAGAAGCGGTGGGGCTGGAAAACGCCGCACGCGTGC
TGAAGCTGTACCCGTTCGAGATGAGCGGCGGCATGTTGCAGCGCATGATGATTGCGATGGCGGTGCTTTGCGAATCACCG
TTTATCATCGCCGATGAACCAACCACCGACCTCGACGTGGTAGCACAGGCGCGCATCCTCGATCTGCTGGAAAGCATTAT
GCAAAAACAGGCACCGGGGATGCTGCTGGTCACCCATGATATGGGCGTAGTGGCGCGTCTGGCGGATGACGTGGCGGTGA
TGTCGCACGGTAAGATTGTCGAACAGGGCGATGTCGAAACGCTGTTTAACGCCCCCAAACATGCGGTGACGCGCAGCCTG
GTTTCCGCTCATCTCGCCCTCTACGGTATGGAGCTGGCATCATGA

Domains

Predicted by InterProScan.

ABC transporter (ABC_tran)

(20-168)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  amiE Streptococcus thermophilus LMG 18311

41.6

98.425

0.409
  amiE Streptococcus thermophilus LMD-9

41.6

98.425

0.409
  amiE Streptococcus salivarius strain HSISS4

40.4

98.425

0.398