Detailed information
Bioinformatically predicted
Overview
| Name | codY | Type | Regulator |
| Locus tag | AVT_RS23450 | Genome accession | NZ_CP115303 |
| Coordinates | 4518899..4519678 (+) | Length | 259 a.a. |
| NCBI ID | WP_000421288.1 | Uniprot ID | Q81WK7 |
| Organism | Bacillus tropicus strain JMT105-2 | ||
| Function | repression of comK (predicted from homology) Competence regulation |
||
Related MGE
Note: This gene co-localizes with putative mobile genetic elements (MGEs) in the genome predicted by VRprofile2, as detailed below.
Gene-MGE association summary
| MGE type | MGE coordinates | Gene coordinates | Relative position | Distance (bp) |
|---|---|---|---|---|
| ICE | 4474603..4530864 | 4518899..4519678 | within | 0 |
Gene organization within MGE regions
Location: 4474603..4530864
| Locus tag | Gene name | Coordinates (strand) | Size (bp) | Protein ID | Product | Description |
|---|---|---|---|---|---|---|
| AVT_RS23235 (AVT_23235) | rpoZ | 4474793..4475005 (+) | 213 | WP_000933969.1 | DNA-directed RNA polymerase subunit omega | - |
| AVT_RS23240 (AVT_23240) | coaBC | 4475178..4476383 (+) | 1206 | WP_270184846.1 | bifunctional phosphopantothenoylcysteine decarboxylase/phosphopantothenate--cysteine ligase CoaBC | - |
| AVT_RS23245 (AVT_23245) | priA | 4476380..4478785 (+) | 2406 | WP_270184847.1 | primosomal protein N' | - |
| AVT_RS23250 (AVT_23250) | def | 4478797..4479267 (+) | 471 | WP_000279468.1 | peptide deformylase | - |
| AVT_RS23255 (AVT_23255) | fmt | 4479291..4480235 (+) | 945 | WP_000598791.1 | methionyl-tRNA formyltransferase | - |
| AVT_RS23260 (AVT_23260) | rsmB | 4480232..4481566 (+) | 1335 | WP_087966329.1 | 16S rRNA (cytosine(967)-C(5))-methyltransferase RsmB | - |
| AVT_RS23265 (AVT_23265) | rlmN | 4481571..4482659 (+) | 1089 | WP_000450543.1 | 23S rRNA (adenine(2503)-C(2))-methyltransferase RlmN | - |
| AVT_RS23270 (AVT_23270) | - | 4482664..4483416 (+) | 753 | WP_000648697.1 | Stp1/IreP family PP2C-type Ser/Thr phosphatase | - |
| AVT_RS23275 (AVT_23275) | prkC | 4483425..4485398 (+) | 1974 | WP_131100671.1 | serine/threonine protein kinase PrkC | - |
| AVT_RS23280 (AVT_23280) | rsgA | 4485667..4486548 (+) | 882 | WP_131100669.1 | ribosome small subunit-dependent GTPase A | - |
| AVT_RS23285 (AVT_23285) | rpe | 4486551..4487195 (+) | 645 | WP_001978961.1 | ribulose-phosphate 3-epimerase | - |
| AVT_RS23290 (AVT_23290) | - | 4487295..4487975 (+) | 681 | WP_002022157.1 | thiamine diphosphokinase | - |
| AVT_RS23295 (AVT_23295) | spoVM | 4488042..4488122 (+) | 81 | WP_001213599.1 | stage V sporulation protein SpoVM | - |
| AVT_RS23300 (AVT_23300) | rpmB | 4488196..4488384 (-) | 189 | WP_000124776.1 | 50S ribosomal protein L28 | - |
| AVT_RS23305 (AVT_23305) | - | 4488763..4489125 (+) | 363 | WP_000021109.1 | Asp23/Gls24 family envelope stress response protein | - |
| AVT_RS23310 (AVT_23310) | - | 4489148..4490824 (+) | 1677 | WP_087966335.1 | DAK2 domain-containing protein | - |
| AVT_RS23315 (AVT_23315) | recG | 4491114..4493162 (+) | 2049 | WP_001006883.1 | ATP-dependent DNA helicase RecG | - |
| AVT_RS23320 (AVT_23320) | fapR | 4493251..4493844 (+) | 594 | WP_000747352.1 | transcription factor FapR | - |
| AVT_RS23325 (AVT_23325) | plsX | 4493841..4494833 (+) | 993 | WP_131100667.1 | phosphate acyltransferase PlsX | - |
| AVT_RS23330 (AVT_23330) | fabD | 4494848..4495792 (+) | 945 | WP_000516953.1 | ACP S-malonyltransferase | - |
| AVT_RS23335 (AVT_23335) | fabG | 4495792..4496532 (+) | 741 | WP_001980554.1 | 3-oxoacyl-[acyl-carrier-protein] reductase | - |
| AVT_RS23340 (AVT_23340) | acpP | 4496602..4496835 (+) | 234 | WP_000786062.1 | acyl carrier protein | - |
| AVT_RS23345 (AVT_23345) | rncS | 4496894..4497631 (+) | 738 | WP_029439599.1 | ribonuclease III | - |
| AVT_RS23350 (AVT_23350) | smc | 4497778..4501347 (+) | 3570 | WP_270184848.1 | chromosome segregation protein SMC | - |
| AVT_RS23355 (AVT_23355) | ftsY | 4501363..4502352 (+) | 990 | WP_000007648.1 | signal recognition particle-docking protein FtsY | - |
| AVT_RS23360 (AVT_23360) | - | 4502486..4502818 (+) | 333 | WP_000891062.1 | putative DNA-binding protein | - |
| AVT_RS23365 (AVT_23365) | ffh | 4502831..4504180 (+) | 1350 | WP_000863460.1 | signal recognition particle protein | - |
| AVT_RS23370 (AVT_23370) | rpsP | 4504281..4504553 (+) | 273 | WP_000268750.1 | 30S ribosomal protein S16 | - |
| AVT_RS23375 (AVT_23375) | - | 4504568..4504795 (+) | 228 | WP_000737398.1 | KH domain-containing protein | - |
| AVT_RS23380 (AVT_23380) | rimM | 4504917..4505432 (+) | 516 | WP_000170268.1 | ribosome maturation factor RimM | - |
| AVT_RS23385 (AVT_23385) | trmD | 4505432..4506166 (+) | 735 | WP_000686892.1 | tRNA (guanosine(37)-N1)-methyltransferase TrmD | - |
| AVT_RS23390 (AVT_23390) | rplS | 4506313..4506657 (+) | 345 | WP_001186516.1 | 50S ribosomal protein L19 | - |
| AVT_RS23395 (AVT_23395) | lepB | 4506759..4507310 (+) | 552 | WP_000711857.1 | signal peptidase I | - |
| AVT_RS23400 (AVT_23400) | ylqF | 4507331..4508221 (+) | 891 | WP_000236700.1 | ribosome biogenesis GTPase YlqF | - |
| AVT_RS23405 (AVT_23405) | rnhB | 4508273..4509046 (+) | 774 | WP_087966339.1 | ribonuclease HII | - |
| AVT_RS23410 (AVT_23410) | sucC | 4509240..4510400 (+) | 1161 | WP_001020785.1 | ADP-forming succinate--CoA ligase subunit beta | - |
| AVT_RS23415 (AVT_23415) | sucD | 4510420..4511322 (+) | 903 | WP_270184849.1 | succinate--CoA ligase subunit alpha | - |
| AVT_RS23420 (AVT_23420) | dprA | 4511410..4512279 (+) | 870 | WP_270184850.1 | DNA-processing protein DprA | - |
| AVT_RS23425 (AVT_23425) | topA | 4512424..4514502 (+) | 2079 | WP_087966343.1 | type I DNA topoisomerase | - |
| AVT_RS23430 (AVT_23430) | trmFO | 4514553..4515857 (+) | 1305 | WP_029439592.1 | FADH(2)-oxidizing methylenetetrahydrofolate--tRNA-(uracil(54)-C(5))- methyltransferase TrmFO | - |
| AVT_RS23435 (AVT_23435) | xerC | 4515923..4516822 (+) | 900 | WP_001101228.1 | tyrosine recombinase XerC | - |
| AVT_RS23440 (AVT_23440) | hslV | 4516865..4517407 (+) | 543 | WP_000526272.1 | ATP-dependent protease proteolytic subunit HslV | - |
| AVT_RS23445 (AVT_23445) | hslU | 4517430..4518821 (+) | 1392 | WP_087966344.1 | ATP-dependent protease ATPase subunit HslU | - |
| AVT_RS23450 (AVT_23450) | codY | 4518899..4519678 (+) | 780 | WP_000421288.1 | GTP-sensing pleiotropic transcriptional regulator CodY | Regulator |
| AVT_RS23455 (AVT_23455) | rpsB | 4520028..4520729 (+) | 702 | WP_000111483.1 | 30S ribosomal protein S2 | - |
| AVT_RS23460 (AVT_23460) | tsf | 4520833..4521720 (+) | 888 | WP_001018581.1 | translation elongation factor Ts | - |
| AVT_RS23465 (AVT_23465) | pyrH | 4521787..4522509 (+) | 723 | WP_000042663.1 | UMP kinase | - |
| AVT_RS23470 (AVT_23470) | frr | 4522512..4523069 (+) | 558 | WP_000531501.1 | ribosome recycling factor | - |
| AVT_RS23475 (AVT_23475) | uppS | 4523155..4523931 (+) | 777 | WP_000971301.1 | isoprenyl transferase | - |
| AVT_RS23480 (AVT_23480) | cdsA | 4523949..4524740 (+) | 792 | WP_000813584.1 | phosphatidate cytidylyltransferase | - |
| AVT_RS23485 (AVT_23485) | dxr | 4524764..4525906 (+) | 1143 | WP_000790362.1 | 1-deoxy-D-xylulose-5-phosphate reductoisomerase | - |
| AVT_RS23490 (AVT_23490) | rseP | 4525923..4527179 (+) | 1257 | WP_001090234.1 | RIP metalloprotease RseP | - |
| AVT_RS23495 (AVT_23495) | - | 4527289..4528989 (+) | 1701 | WP_061685605.1 | proline--tRNA ligase | - |
Sequence
Protein
Download Length: 259 a.a. Molecular weight: 28774.05 Da Isoelectric Point: 4.7947
>NTDB_id=771755 AVT_RS23450 WP_000421288.1 4518899..4519678(+) (codY) [Bacillus tropicus strain JMT105-2]
MELLAKTRKLNALLQSAAGKPVNFREMSDTMCEVIEANVFVVSRRGKLLGYAIHQQIENERMKQMLAERQFPEEYTQSLF
NITETSSNLDVNSAYTAFPVENKELFGQGLTTIVPIVGGGERLGTLVLARLGQEFLDDDLILAEYSSTVVGMEILREKAE
EIEEEARSKAVVQMAISSLSYSELEAIEHIFEELNGTEGLLVASKIADRVGITRSVIVNALRKLESAGVIESRSLGMKGT
YIKVLNDKFLHELAKLKTN
MELLAKTRKLNALLQSAAGKPVNFREMSDTMCEVIEANVFVVSRRGKLLGYAIHQQIENERMKQMLAERQFPEEYTQSLF
NITETSSNLDVNSAYTAFPVENKELFGQGLTTIVPIVGGGERLGTLVLARLGQEFLDDDLILAEYSSTVVGMEILREKAE
EIEEEARSKAVVQMAISSLSYSELEAIEHIFEELNGTEGLLVASKIADRVGITRSVIVNALRKLESAGVIESRSLGMKGT
YIKVLNDKFLHELAKLKTN
Nucleotide
Download Length: 780 bp
>NTDB_id=771755 AVT_RS23450 WP_000421288.1 4518899..4519678(+) (codY) [Bacillus tropicus strain JMT105-2]
ATGGAATTATTAGCAAAAACAAGAAAATTAAATGCGTTATTACAGAGCGCAGCAGGAAAGCCTGTAAACTTTAGAGAAAT
GTCTGACACAATGTGTGAAGTAATCGAAGCGAACGTATTCGTAGTAAGCCGTCGTGGTAAATTACTAGGTTATGCAATTC
ACCAACAAATTGAGAATGAGCGTATGAAACAAATGCTTGCAGAACGTCAATTCCCAGAAGAGTATACACAAAGCTTATTC
AACATTACAGAAACATCTTCAAACTTAGATGTAAATAGTGCTTACACAGCATTTCCAGTAGAAAATAAAGAATTATTTGG
TCAAGGTTTAACTACAATCGTACCGATCGTTGGTGGCGGTGAGCGTCTAGGTACATTAGTTTTAGCTCGTCTTGGTCAAG
AGTTCTTAGATGATGATTTAATTCTTGCTGAGTACAGCTCAACTGTTGTAGGTATGGAAATTTTACGTGAAAAAGCAGAA
GAAATTGAAGAAGAAGCACGTAGCAAAGCTGTTGTTCAAATGGCGATCAGCTCATTATCTTACAGTGAGTTAGAAGCAAT
CGAGCACATCTTTGAAGAATTAAACGGAACAGAAGGTTTACTTGTTGCAAGTAAAATTGCTGACCGCGTAGGAATCACTC
GTTCAGTAATCGTAAATGCACTTCGTAAATTAGAAAGTGCTGGTGTAATTGAGTCGCGTTCTTTAGGTATGAAAGGAACA
TACATTAAAGTATTAAACGACAAATTCTTACATGAACTTGCTAAATTAAAAACAAACTAA
ATGGAATTATTAGCAAAAACAAGAAAATTAAATGCGTTATTACAGAGCGCAGCAGGAAAGCCTGTAAACTTTAGAGAAAT
GTCTGACACAATGTGTGAAGTAATCGAAGCGAACGTATTCGTAGTAAGCCGTCGTGGTAAATTACTAGGTTATGCAATTC
ACCAACAAATTGAGAATGAGCGTATGAAACAAATGCTTGCAGAACGTCAATTCCCAGAAGAGTATACACAAAGCTTATTC
AACATTACAGAAACATCTTCAAACTTAGATGTAAATAGTGCTTACACAGCATTTCCAGTAGAAAATAAAGAATTATTTGG
TCAAGGTTTAACTACAATCGTACCGATCGTTGGTGGCGGTGAGCGTCTAGGTACATTAGTTTTAGCTCGTCTTGGTCAAG
AGTTCTTAGATGATGATTTAATTCTTGCTGAGTACAGCTCAACTGTTGTAGGTATGGAAATTTTACGTGAAAAAGCAGAA
GAAATTGAAGAAGAAGCACGTAGCAAAGCTGTTGTTCAAATGGCGATCAGCTCATTATCTTACAGTGAGTTAGAAGCAAT
CGAGCACATCTTTGAAGAATTAAACGGAACAGAAGGTTTACTTGTTGCAAGTAAAATTGCTGACCGCGTAGGAATCACTC
GTTCAGTAATCGTAAATGCACTTCGTAAATTAGAAAGTGCTGGTGTAATTGAGTCGCGTTCTTTAGGTATGAAAGGAACA
TACATTAAAGTATTAAACGACAAATTCTTACATGAACTTGCTAAATTAAAAACAAACTAA
Similar proteins
Only experimentally validated proteins are listed.
| Protein | Organism | Identities (%) | Coverage (%) | Ha-value |
|---|---|---|---|---|
| codY | Bacillus subtilis subsp. subtilis str. 168 |
81.081 |
100 |
0.811 |
| codY | Lactococcus lactis subsp. lactis strain DGCC12653 |
46.667 |
98.456 |
0.459 |