Detailed information    

insolico Bioinformatically predicted

Overview

Name   recD2   Type   Machinery gene
Locus tag   AVT_RS20600 Genome accession   NZ_CP115303
Coordinates   3998789..4001125 (+) Length   778 a.a.
NCBI ID   WP_087965849.1    Uniprot ID   -
Organism   Bacillus tropicus strain JMT105-2     
Function   homologous recombination (predicted from homology)   
Homologous recombination

Genomic Context

Location: 3993789..4006125
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  AVT_RS20580 (AVT_20580) cymR 3995193..3995609 (+) 417 WP_000704116.1 cysteine metabolism transcriptional regulator CymR -
  AVT_RS20585 (AVT_20585) - 3995645..3996790 (+) 1146 WP_270184772.1 cysteine desulfurase family protein -
  AVT_RS20590 (AVT_20590) mnmA 3996807..3997922 (+) 1116 WP_001038008.1 tRNA 2-thiouridine(34) synthase MnmA -
  AVT_RS20595 (AVT_20595) - 3998033..3998692 (+) 660 WP_000066393.1 tetratricopeptide repeat protein -
  AVT_RS20600 (AVT_20600) recD2 3998789..4001125 (+) 2337 WP_087965849.1 ATP-dependent RecD-like DNA helicase Machinery gene
  AVT_RS20605 (AVT_20605) - 4001253..4001441 (+) 189 WP_000469281.1 hypothetical protein -
  AVT_RS20610 (AVT_20610) - 4001460..4001588 (+) 129 WP_001053553.1 YrzQ family protein -
  AVT_RS20615 (AVT_20615) - 4001624..4001836 (-) 213 WP_087965847.1 hypothetical protein -
  AVT_RS20620 (AVT_20620) - 4002013..4003080 (+) 1068 WP_270184773.1 AI-2E family transporter -
  AVT_RS20625 (AVT_20625) - 4003120..4003464 (-) 345 WP_087965843.1 PH domain-containing protein -

Sequence

Protein


Download         Length: 778 a.a.        Molecular weight: 87453.92 Da        Isoelectric Point: 5.2015

>NTDB_id=771747 AVT_RS20600 WP_087965849.1 3998789..4001125(+) (recD2) [Bacillus tropicus strain JMT105-2]
MGNQHAMDLFEEEKKFIKAQVLHTIFHNEENLYSVVSMKVIETNETYDEKKVMINGHFPRMHEDEMFTLTGHFKDHPKYG
KQYMVETFKKELPQTKAGMVQYLASDLFKGIGKRTAEKIVDHLGEHAISKIMDDPEALNGVVNKQKAQEIYETIVEHQGL
EKVMSFLNGYGFGTKLSIKIYQQYKEMTLEVIRNNPYQLIEEVDGIGFGRADDIGRALGISGNHDDRVRAGCFYTLENVS
LQLGHVYMRKDQLVRETMSLLNNQEGRVTEEDIVGCIETMQSEGKVIIEEERVYLATLFYSEKGVVKSIRRLMNQEETPS
FPEAEVLKTLGEIEEQLNVQYAPFQQEAIQTALHKPMMLLTGGPGTGKTTVIKGIVEMYASLHGLSLNPNEYSDDNPFPI
LLTAPTGRAAKRMSESTGLPACTIHRLLGWTPEGSFQRNETDPVQGKLLIIDEFSMVDIWLANQLFKSLPTNIQVIVVGD
EDQLPSVGPGQVLKDLLNAGAVPTVKLTEIYRQAEGSSVIQLAHAIKNGTLPPDLAQNQKDRSFIGCTGAQIVEVVKKVC
ENAKTKGFSARDVQVLAPMYRGPAGINVLNEALQEVFNPKREKSKEIAYGDVVYRRGDKVLQLVNQPESQVFNGDIGEIV
SVFYAKENVEQQDMIIVSFDGIEVTYTKPDLNQITHAYCCSIHKSQGSEFPIVIMPIVKSYNRMLRRNLIYTGITRSKKF
LIICGEEAAFQSGVNRLDDAMRQTTLASRLQESQGEVQMVTVNGEEMDVENISPYDFM

Nucleotide


Download         Length: 2337 bp        

>NTDB_id=771747 AVT_RS20600 WP_087965849.1 3998789..4001125(+) (recD2) [Bacillus tropicus strain JMT105-2]
ATGGGAAATCAACATGCAATGGATTTGTTTGAGGAAGAGAAAAAGTTTATAAAAGCGCAAGTTCTTCATACCATTTTCCA
CAACGAAGAAAACCTCTATTCCGTTGTCAGTATGAAAGTCATTGAAACGAATGAAACGTACGACGAAAAGAAAGTAATGA
TAAACGGTCATTTTCCCCGCATGCATGAAGATGAAATGTTTACGTTGACAGGTCATTTTAAAGACCATCCGAAGTATGGA
AAACAATATATGGTCGAAACGTTTAAGAAAGAATTGCCGCAAACGAAAGCCGGTATGGTGCAATATTTAGCGAGTGATTT
ATTTAAAGGGATAGGAAAGCGTACAGCTGAAAAAATTGTAGATCATCTCGGAGAACATGCTATTTCTAAAATTATGGATG
ACCCTGAGGCATTAAATGGTGTTGTTAATAAACAAAAGGCTCAGGAGATATATGAGACAATTGTTGAACATCAAGGATTA
GAGAAAGTAATGAGCTTTTTAAATGGCTACGGTTTTGGAACGAAACTTTCTATTAAGATTTACCAGCAATATAAAGAGAT
GACATTAGAAGTGATTCGTAATAACCCGTACCAACTTATCGAAGAAGTGGACGGGATTGGTTTTGGAAGAGCGGATGATA
TAGGGCGTGCGTTAGGGATATCGGGTAATCACGACGACCGTGTACGCGCAGGATGTTTTTACACGTTAGAGAATGTCTCA
TTACAACTTGGTCACGTTTATATGAGGAAAGACCAACTTGTAAGAGAAACGATGTCACTTTTAAACAATCAAGAAGGAAG
AGTGACTGAGGAAGATATTGTAGGCTGTATTGAAACGATGCAAAGTGAAGGGAAAGTCATCATAGAAGAAGAGCGAGTGT
ATTTAGCAACGTTATTCTACTCTGAAAAAGGTGTTGTAAAGTCCATTCGCAGGCTTATGAATCAAGAAGAAACACCTTCA
TTTCCAGAGGCAGAAGTGTTAAAAACATTAGGTGAAATTGAAGAACAACTGAACGTACAATATGCACCGTTTCAGCAAGA
AGCAATTCAAACGGCACTTCATAAACCGATGATGTTATTGACAGGTGGACCAGGAACAGGGAAAACAACAGTTATTAAAG
GAATTGTTGAAATGTATGCGTCACTTCACGGGCTATCGTTAAATCCGAATGAATACAGTGATGATAATCCATTTCCGATA
TTATTAACGGCTCCAACAGGAAGGGCAGCGAAGCGAATGAGTGAATCAACAGGGCTTCCAGCTTGTACAATTCACCGTTT
ACTTGGCTGGACGCCAGAAGGGTCTTTCCAGCGTAATGAAACAGATCCGGTACAAGGGAAATTACTCATTATTGATGAAT
TTTCAATGGTTGATATTTGGCTTGCAAATCAGCTATTTAAATCATTACCGACTAACATTCAAGTTATCGTTGTAGGCGAT
GAAGATCAATTGCCATCTGTAGGACCTGGACAAGTATTGAAAGATTTATTGAATGCAGGTGCAGTTCCAACAGTGAAGCT
TACTGAAATTTATCGTCAAGCGGAAGGTTCATCAGTAATTCAACTTGCCCATGCGATAAAAAACGGCACGCTTCCGCCAG
ATTTAGCGCAAAATCAAAAAGATCGTTCATTTATCGGCTGCACAGGAGCCCAAATTGTTGAGGTTGTTAAGAAGGTTTGC
GAAAACGCTAAGACAAAAGGGTTTAGCGCAAGAGATGTACAAGTATTGGCCCCGATGTATCGTGGACCGGCTGGTATTAA
TGTACTAAACGAAGCGTTGCAAGAAGTGTTTAATCCGAAAAGAGAAAAGAGTAAAGAAATTGCTTACGGTGATGTTGTAT
ACCGAAGAGGCGATAAAGTTTTGCAACTCGTTAATCAGCCGGAGAGCCAAGTGTTTAATGGTGATATCGGCGAAATTGTT
TCGGTGTTTTATGCGAAAGAAAACGTTGAGCAACAAGATATGATTATCGTTTCATTTGATGGAATTGAGGTAACATATAC
AAAACCAGATTTAAATCAAATTACACATGCCTATTGCTGTTCCATTCATAAATCGCAAGGTAGTGAGTTTCCGATTGTGA
TTATGCCGATAGTGAAAAGTTATAATCGTATGTTACGTCGTAATTTAATTTATACTGGTATTACAAGAAGTAAGAAGTTC
CTTATTATTTGCGGGGAGGAAGCTGCTTTTCAGTCTGGTGTAAATCGCCTTGATGATGCAATGCGTCAAACGACTTTAGC
TAGTAGATTGCAGGAATCACAAGGAGAAGTACAGATGGTAACGGTTAATGGCGAAGAAATGGACGTGGAAAACATTTCAC
CGTATGATTTCATGTAA

Domains

Predicted by InterproScan.

AAA domain (AAA_30)

(341-548)

Helix-hairpin-helix containing domain (HHH_RecD2)

(156-247)

UvrD-like helicase C-terminal domain (UvrD_C_2)

(676-724)

ATP-dependent RecD-like DNA helicase SH3 domain (SH3_13)

(589-659)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  recD2 Bacillus subtilis subsp. subtilis str. 168

57.016

100

0.58