Detailed information    

insolico Bioinformatically predicted

Overview

Name   amiE   Type   Regulator
Locus tag   QQ972_RS02775 Genome accession   NZ_CP127255
Coordinates   554234..554998 (+) Length   254 a.a.
NCBI ID   WP_001136232.1    Uniprot ID   Q0TBX9
Organism   Escherichia coli strain Q5     
Function   internalize XIP (predicted from homology)   
Competence regulation

Genomic Context

Location: 549234..559998
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  QQ972_RS02755 (QQ972_02755) acpT 550188..550775 (+) 588 WP_000285789.1 4'-phosphopantetheinyl transferase AcpT -
  QQ972_RS02760 (QQ972_02760) nikA 550886..552460 (+) 1575 WP_097752122.1 nickel ABC transporter substrate-binding protein -
  QQ972_RS02765 (QQ972_02765) nikB 552460..553404 (+) 945 WP_000947070.1 nickel ABC transporter permease subunit NikB -
  QQ972_RS02770 (QQ972_02770) nikC 553401..554234 (+) 834 WP_001008957.1 nickel ABC transporter permease subunit NikC -
  QQ972_RS02775 (QQ972_02775) amiE 554234..554998 (+) 765 WP_001136232.1 nickel import ATP-binding protein NikD Regulator
  QQ972_RS02780 (QQ972_02780) nikE 554995..555801 (+) 807 WP_097752124.1 nickel import ATP-binding protein NikE -
  QQ972_RS02785 (QQ972_02785) nikR 555807..556208 (+) 402 WP_001190062.1 nickel-responsive transcriptional regulator NikR -
  QQ972_RS02790 (QQ972_02790) - 556407..557153 (+) 747 Protein_545 GntR family transcriptional regulator -
  QQ972_RS02795 (QQ972_02795) - 557178..557651 (+) 474 WP_001161651.1 PTS sugar transporter subunit IIA -
  QQ972_RS02800 (QQ972_02800) - 557648..557929 (+) 282 WP_000084021.1 PTS sugar transporter subunit IIB -
  QQ972_RS02805 (QQ972_02805) - 558006..559364 (+) 1359 WP_001306345.1 PTS galactitol transporter subunit IIC -

Sequence

Protein


Download         Length: 254 a.a.        Molecular weight: 26812.40 Da        Isoelectric Point: 6.6882

>NTDB_id=771638 QQ972_RS02775 WP_001136232.1 554234..554998(+) (amiE) [Escherichia coli strain Q5]
MPQQIELRNIALQAAQPLVHGVSLTLQRGRVLALVGGSGSGKSLTCAATLGILPAGVRQTAGEILADGKPVSPCALRGIK
IATIMQNPRSAFNPLHTMHTHARETCLALGKPADDATLTAAIEAVGLENAARVLKLYPFEMSGGMLQRMMIAMAVLCESP
FIIADEPTTDLDVVAQARILDLLESIMQKQAPGMLLVTHDMGVVARLADDVAVMSHGKIVEQGDVETLFNAPKHAVTRSL
VSAHLALYGMELAS

Nucleotide


Download         Length: 765 bp        

>NTDB_id=771638 QQ972_RS02775 WP_001136232.1 554234..554998(+) (amiE) [Escherichia coli strain Q5]
ATGCCACAACAGATTGAACTCCGTAATATCGCGCTACAGGCCGCGCAGCCGCTGGTGCACGGCGTATCGTTAACCCTGCA
ACGTGGGCGTGTGCTGGCGTTAGTCGGCGGTAGTGGCAGCGGGAAGTCGCTGACCTGCGCCGCGACGCTGGGCATTCTGC
CTGCTGGCGTTCGCCAGACGGCGGGGGAAATTTTGGCCGATGGAAAACCGGTTTCTCCCTGCGCCCTGCGCGGCATCAAA
ATTGCCACCATCATGCAGAACCCGCGCAGCGCCTTTAATCCGCTGCACACCATGCACACTCACGCGCGTGAAACCTGCCT
GGCGCTGGGGAAACCCGCCGACGACGCTACGCTTACCGCTGCCATAGAAGCGGTGGGGCTGGAAAACGCCGCGCGCGTGC
TGAAGCTCTACCCGTTCGAGATGAGCGGCGGCATGTTGCAGCGCATGATGATTGCGATGGCAGTGCTGTGCGAATCACCG
TTTATCATCGCCGATGAACCAACCACCGACCTCGACGTAGTAGCACAAGCACGCATCCTCGATCTACTGGAAAGCATTAT
GCAAAAACAAGCACCGGGAATGCTGCTGGTTACCCATGATATGGGCGTGGTAGCGCGTCTGGCAGACGATGTGGCGGTAA
TGTCTCACGGTAAGATTGTTGAACAGGGCGATGTAGAAACGCTGTTTAACGCCCCCAAACATGCGGTAACGCGCAGCCTG
GTTTCCGCTCATCTCGCCCTCTACGGTATGGAGCTGGCATCATGA

Domains

Predicted by InterProScan.

ABC transporter (ABC_tran)

(20-168)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  AlphaFold DB Q0TBX9

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  amiE Streptococcus thermophilus LMG 18311

41.6

98.425

0.409
  amiE Streptococcus thermophilus LMD-9

41.6

98.425

0.409
  amiE Streptococcus salivarius strain HSISS4

40.4

98.425

0.398