Detailed information    

insolico Bioinformatically predicted

Overview

Name   pilN   Type   Machinery gene
Locus tag   QQX50_RS26045 Genome accession   NZ_CP127124
Coordinates   5631094..5631690 (-) Length   198 a.a.
NCBI ID   WP_003095839.1    Uniprot ID   G3XD30
Organism   Pseudomonas aeruginosa strain PA01_BIM     
Function   assembly of type IV pilus (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 5626094..5636690
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  QQX50_RS26025 (QQX50_26030) aroK 5627225..5627743 (-) 519 WP_003095833.1 shikimate kinase AroK -
  QQX50_RS26030 (QQX50_26035) pilQ 5627755..5629899 (-) 2145 WP_003114575.1 type 4a pilus secretin PilQ Machinery gene
  QQX50_RS26035 (QQX50_26040) comL/pilP 5629953..5630477 (-) 525 WP_003095836.1 type 4a pilus biogenesis lipoprotein PilP Machinery gene
  QQX50_RS26040 (QQX50_26045) pilO 5630474..5631097 (-) 624 WP_003103268.1 type 4a pilus biogenesis protein PilO Machinery gene
  QQX50_RS26045 (QQX50_26050) pilN 5631094..5631690 (-) 597 WP_003095839.1 type 4a pilus biogenesis protein PilN Machinery gene
  QQX50_RS26050 (QQX50_26055) pilM 5631690..5632754 (-) 1065 WP_003110888.1 type IV pilus assembly protein PilM Machinery gene
  QQX50_RS26055 (QQX50_26060) - 5632939..5635407 (+) 2469 WP_003114576.1 penicillin-binding protein 1A -

Sequence

Protein


Download         Length: 198 a.a.        Molecular weight: 22213.55 Da        Isoelectric Point: 10.0895

>NTDB_id=771013 QQX50_RS26045 WP_003095839.1 5631094..5631690(-) (pilN) [Pseudomonas aeruginosa strain PA01_BIM]
MARINLLPWREELREQRKQQFLVILGGVLVASAALVFLGDQYFTAAIENQNARNDFLRKEIVVLDARIKEISELKSRRQQ
LLERMKIIQDLQGNRPIIGRVFDQLVRTLPDGVYFTDLKMTGKNIAIAGAAESNNRVSNLMRNMDASEWLTAPTLNEVKA
VTQGAVDQANVFQLTVQQTQPGEEDAKAKHGVAQGAKK

Nucleotide


Download         Length: 597 bp        

>NTDB_id=771013 QQX50_RS26045 WP_003095839.1 5631094..5631690(-) (pilN) [Pseudomonas aeruginosa strain PA01_BIM]
ATGGCACGGATCAACCTTCTACCCTGGCGCGAAGAGCTGCGCGAGCAGCGCAAGCAGCAGTTCCTGGTGATTCTTGGCGG
CGTCCTGGTGGCATCGGCTGCGCTGGTATTCCTTGGCGACCAGTACTTCACCGCGGCCATCGAGAACCAGAACGCCCGCA
ACGACTTCCTGCGCAAGGAAATCGTCGTACTCGACGCCCGGATCAAGGAAATCAGCGAACTGAAGTCGCGGCGCCAGCAA
TTGCTCGAGCGGATGAAGATCATCCAGGACCTGCAGGGCAACCGTCCCATCATCGGACGGGTGTTCGACCAGCTCGTGCG
GACCTTGCCCGACGGCGTGTATTTCACCGACCTGAAGATGACCGGCAAGAACATCGCCATCGCCGGCGCGGCCGAGTCCA
ACAACCGCGTTTCCAATCTCATGCGCAACATGGACGCGTCCGAGTGGCTGACCGCCCCGACCCTGAACGAGGTCAAGGCG
GTGACCCAGGGCGCGGTGGACCAGGCCAACGTGTTCCAACTGACCGTGCAGCAGACGCAGCCCGGCGAGGAAGACGCCAA
GGCGAAGCATGGGGTTGCGCAAGGAGCCAAGAAATGA

Domains

Predicted by InterProScan.

Fimbrial assembly protein (PilN) (PilN)

(100-177)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  PDB 5EOU

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  pilN Legionella pneumophila strain ERS1305867

41.714

88.384

0.369