Detailed information    

insolico Bioinformatically predicted

Overview

Name   comF   Type   Machinery gene
Locus tag   QQX47_RS04200 Genome accession   NZ_CP127122
Coordinates   892254..892679 (-) Length   141 a.a.
NCBI ID   WP_003094721.1    Uniprot ID   G3XD43
Organism   Pseudomonas aeruginosa strain Ned_5_BIM     
Function   assembly of type IV pilus (predicted from homology)   
DNA binding and uptake

Genomic Context

Location: 887254..897679
Locus tag Gene name Coordinates (strand) Size (bp) Protein ID Product Description
  QQX47_RS04180 (QQX47_04180) ileS 887413..890244 (+) 2832 WP_023103515.1 isoleucine--tRNA ligase -
  QQX47_RS04185 (QQX47_04185) lspA 890237..890746 (+) 510 WP_003102615.1 signal peptidase II -
  QQX47_RS04190 (QQX47_04190) fkpB 890739..891179 (+) 441 WP_003102613.1 FKBP-type peptidyl-prolyl cis-trans isomerase -
  QQX47_RS04195 (QQX47_04195) ispH 891265..892209 (+) 945 WP_003094724.1 4-hydroxy-3-methylbut-2-enyl diphosphate reductase -
  QQX47_RS04200 (QQX47_04200) comF 892254..892679 (-) 426 WP_003094721.1 type 4a pilus minor pilin PilE Machinery gene
  QQX47_RS04205 (QQX47_04205) pilY2 892676..893023 (-) 348 WP_021264112.1 type 4a fimbrial biogenesis protein PilY2 -
  QQX47_RS04210 (QQX47_04210) pilY1 893025..896510 (-) 3486 WP_180361166.1 type 4a pilus biogenesis protein PilY1 -
  QQX47_RS04215 (QQX47_04215) pilX 896522..897109 (-) 588 WP_003112826.1 type 4a pilus minor pilin PilX -

Sequence

Protein


Download         Length: 141 a.a.        Molecular weight: 15279.30 Da        Isoelectric Point: 10.0198

>NTDB_id=770746 QQX47_RS04200 WP_003094721.1 892254..892679(-) (comF) [Pseudomonas aeruginosa strain Ned_5_BIM]
MRTRQKGFTLLEMVVVVAVIGILLGIAIPSYQNYVIRSNRTEGQALLSDAAARQERYYSQNPGVGYTKDVAKLGMSSANS
PNNLYNLTIATPTSTTYTLTATPINSQTRDKTCGKLTLNQLGERGAAGKTGNNSTVNDCWR

Nucleotide


Download         Length: 426 bp        

>NTDB_id=770746 QQX47_RS04200 WP_003094721.1 892254..892679(-) (comF) [Pseudomonas aeruginosa strain Ned_5_BIM]
ATGAGGACAAGACAGAAGGGCTTCACGTTGCTGGAAATGGTGGTGGTAGTGGCGGTGATCGGTATCCTCCTCGGCATCGC
CATTCCCAGTTACCAGAACTACGTGATCCGCTCCAACCGCACCGAGGGCCAGGCCCTGCTCTCGGACGCGGCCGCGCGCC
AGGAACGCTACTACTCGCAGAACCCCGGGGTCGGCTACACCAAGGACGTGGCCAAGCTGGGCATGAGTTCGGCCAACTCG
CCGAACAACCTGTACAACCTCACCATAGCGACGCCCACCAGCACCACCTATACCCTGACCGCCACGCCGATCAACTCGCA
GACCCGCGACAAGACCTGCGGCAAGCTGACCCTCAATCAGCTCGGCGAACGCGGCGCAGCCGGCAAAACCGGCAACAACA
GCACCGTCAACGACTGCTGGCGCTGA

Domains

Predicted by InterProScan.

Type IV minor pilin ComP, DNA uptake sequence receptor (ComP_DUS)

(29-117)

Prokaryotic N-terminal methylation motif (N_methyl)

(3-27)


Secondary structure

Protein secondary structures were predicted by S4PRED and visualized by seqviz.



3D structure

Source ID Structure
  PDB 4NOA

Transmembrane helices

Transmembrane helices of protein were predicted by TMHMM 2.0 and visualized by seqviz and ECharts.


Visualization of predicted probability:


Similar proteins

Only experimentally validated proteins are listed.

Protein Organism Identities (%) Coverage (%) Ha-value
  comF Acinetobacter baylyi ADP1

42.188

90.78

0.383